PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00015_0110
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 347aa    MW: 36647.9 Da    PI: 8.4252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00015_0110genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-072749426
                   ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                   + C+++     C++GdrC+F+Hg
  kfl00015_0110 27 RMCKRYDTPEGCPFGDRCRFSHG 49
                   67******9*************8 PP
2zf-CCCH19.41.9e-066688426
                   ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    +C+ f+ t  C+yGd+C+F H 
  kfl00015_0110 66 QPCQKFFSTNGCPYGDTCHFTHH 88
                   69******************995 PP
3zf-CCCH35.91.2e-11125148226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    kt+ Cr+f++ G C +GdrC+FaHg
  kfl00015_0110 125 KTRMCRNFQE-GNCTFGDRCHFAHG 148
                    9*********.*************8 PP
4zf-CCCH33.85.8e-11285310127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+ C  f++ G C +Gd+C+FaHg+
  kfl00015_0110 285 FKTRMCEKFMQ-GACTFGDKCHFAHGQ 310
                    69*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3282451IPR000571Zinc finger, CCCH-type
SMARTSM003560.532550IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-62554IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-82753IPR000571Zinc finger, CCCH-type
PfamPF146080.152949No hitNo description
PROSITE profilePS5010311.9486290IPR000571Zinc finger, CCCH-type
SMARTSM003560.0566389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-76489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-66490IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-56688IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-16121153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9122153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.187123150IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5123149IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8125148IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.47E-13193273IPR004088K Homology domain, type 1
SMARTSM003222.1E-10194265IPR004087K Homology domain
PROSITE profilePS5008415.661195260IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.2E-15198266IPR004088K Homology domain, type 1
CDDcd001052.73E-12199261No hitNo description
PfamPF000131.2E-12199261IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.2E-15282315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-9283315IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5284310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666284311IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-8285310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDPFAGPPDK RRAFDDAGQS NGVQRDRMCK RYDTPEGCPF GDRCRFSHGA DDPRFKGAAN  60
GASQKQPCQK FFSTNGCPYG DTCHFTHHVS GPPPRIIIGS GQSAAAAPLP SYRAPEPDQG  120
QQNMKTRMCR NFQEGNCTFG DRCHFAHGNQ EMRAGPPRSA PPSGFTSTMA PEGSGVKEFP  180
LLWGESATDA AGNVTMMATI TFPQEMAGSI IGKGGQNVRQ IQVTSGAKVT LKPSPADPNN  240
LKDVDIEGTG AAVQSAASLI QRTLADKLNN PGGSRPGAGA ASPFFKTRMC EKFMQGACTF  300
GDKCHFAHGQ ADLRTRTDQP AAYGAQPAAY GGPPPYQAGP PGGVAAY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HMZ70.0A0A1Y1HMZ7_KLENI; CCCH-type Zn-finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-28C3H family protein