PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00013_0370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | NF-YB | ||||||||
Protein Properties | Length: 151aa MW: 16814.3 Da PI: 5.092 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 72.2 | 8.7e-23 | 12 | 100 | 2 | 90 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +++d lP a v +++++++P +a++s++ k+++ +c +efi++v+sea++ c +ekr t+ ++ +l al +lGf + ++++k +++ kfl00013_0370 12 KDTDVGLPKATVHKVVREMFPPDARLSNEVKDLLADCCTEFITLVSSEANELCDKEKRSTLMPEHVLAALENLGFANLLDEVKETWRQH 100 688999**************************************************************************999766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.0E-34 | 11 | 144 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.36E-32 | 15 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-20 | 18 | 81 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MADLETTAGK PKDTDVGLPK ATVHKVVREM FPPDARLSNE VKDLLADCCT EFITLVSSEA 60 NELCDKEKRS TLMPEHVLAA LENLGFANLL DEVKETWRQH KAAMLESPKP MDKWSKQGPK 120 MSDEEAIAAQ QKMFAEARAR MQTKSPLGES L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-31 | 13 | 138 | 11 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002965285.2 | 2e-50 | protein Dr1 homolog | ||||
Refseq | XP_024516159.1 | 2e-50 | protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-43 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A1Y1HIW5 | 1e-106 | A0A1Y1HIW5_KLENI; CCAAT-binding factor | ||||
STRING | EFJ12470 | 6e-50 | (Selaginella moellendorffii) | ||||
STRING | EFJ34123 | 6e-50 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3449 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 6e-46 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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