PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00011_0350

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C3H

Protein Properties

Length: 426aa MW: 45969.3 Da PI: 8.6605

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00011_0350	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.7e-06	181	203	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++ G C +G C++ H+p kfl00011_0350 181 VCKYWVNEGRCARGVDCPYEHPP 203 6********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.098	176	204	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-5	177	203	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-4	178	203	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF53335	5.55E-6	234	297	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	8.7E-6	249	295	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MIPGSLLASL PQKLRIGSLV ECWGDCLENL SAVRADPQHS GPTCRSSDGE TQVQDVAAAK 60 NGIGGVTDEP IQNAKFEELG ERRCALSNGA ASREGAHHLE ISPSLQEGGS SSSLKTRCKG 120 SSLTGKVIPD VDWMLQVSSL NVFDPRGSAS GNEFLYKHLA AKSELPSVCR GGRSAQAKPG 180 VCKYWVNEGR CARGVDCPYE HPPHGEPLKK ARAGYLAAKA SGNHALGNAG KAKRAQVFGD 240 WVKETYERGN PDLRVVDVAA GAHGELAFHL AEHGIFCTSV EPRERKLTKA QRKALAEKGV 300 RLPKESTPPA LPQSLVGAHR RELFADDKFW TDVVRKEADI LVGLHPDQVT EAIVDVALRA 360 GVPFAVVPCC VFPKLFPDRR IGDGRPVITY EDFVEYLQRK GKAHGKVVEK ATLKFAGSNT 420 VLFTRT

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MIPGSLLASL PQKLRIGSLV ECWGDCLENL SAVRADPQHS GPTCRSSDGE TQVQDVAAAK  60
NGIGGVTDEP IQNAKFEELG ERRCALSNGA ASREGAHHLE ISPSLQEGGS SSSLKTRCKG  120
SSLTGKVIPD VDWMLQVSSL NVFDPRGSAS GNEFLYKHLA AKSELPSVCR GGRSAQAKPG  180
VCKYWVNEGR CARGVDCPYE HPPHGEPLKK ARAGYLAAKA SGNHALGNAG KAKRAQVFGD  240
WVKETYERGN PDLRVVDVAA GAHGELAFHL AEHGIFCTSV EPRERKLTKA QRKALAEKGV  300
RLPKESTPPA LPQSLVGAHR RELFADDKFW TDVVRKEADI LVGLHPDQVT EAIVDVALRA  360
GVPFAVVPCC VFPKLFPDRR IGDGRPVITY EDFVEYLQRK GKAHGKVVEK ATLKFAGSNT  420
VLFTRT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1HR90	0.0	A0A1Y1HR90_KLENI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP18289	2	2