PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00032266-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 810aa    MW: 88076.5 Da    PI: 5.9799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00032266-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.64.3e-1274448012374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs++++e+a+ +L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp s++    s++ ++a+++f+ +sP++k
  WALNUT_00032266-RA 444 LTLLLQCAEAVSADNFEEANMTLLEISELSTPFGTAAQRVAAYFSEAMSARLVSSCLGIYAALPHSQSY---SQKMASAFQVFNGISPLVK 531
                         579**************************************************************9998...99999************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s ++le+tg+rL++fA++lg+pfef + +a
  WALNUT_00032266-RA 532 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMDALEATGKRLSDFADKLGLPFEFVP-LA 617
                         *********************************************************....***************************.59 PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.ea 273
                         +++ ++++e+L+v+++EalaV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl ++
  WALNUT_00032266-RA 618 EKVGNIDPERLNVSKREALAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLgAS 701
                         ************************9..999999999999....**********************.899*******************999 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++ls +aa+qa lll++++s+gy++ e++g+l lgWkd
  WALNUT_00032266-RA 702 SYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHSWREKLQQCGFKGLSLSGNAATQATLLLAMFPSEGYTLVEDNGTLKLGWKD 791
                         9******************************888776.***************************************************** PP

                GRAS 365 rpLvsvSaWr 374
                          +L+++SaWr
  WALNUT_00032266-RA 792 LSLLTASAWR 801
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.574417781IPR005202Transcription factor GRAS
PfamPF035141.5E-124444801IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MAGCTLLDVG VNGSSSDENR DRSNIFKGRI PLTSASNTIN EDPGTCEDLP QINRGLPHRQ  60
PNGKILRKRM ASEMEMEVQA AFATATCKND YTRLSCSSIN ATSTTAVSSM GGGSFPALAA  120
SNNCIASGDT FLKPNPKQTK YHSTLLDSST NLTTSISGGG SCGFLSCVTP ASLSHDHGDE  180
TLSLQHQHYQ SLSQDPAVCG FSGLPSFPSE SYQNNNNNSN SNISRSVPNR SGAVAVTPSM  240
EDSSAKAWID GVIKDLIHSS NNVSIPQLIQ NVREIIYPCN PNLAALLEYK LLSLTPTDPS  300
PIYREGRSAA VQQQQQGLVQ GSSERIKFNL LDSGNFSSPK HINQLYLHQG IAPLPSASPD  360
PAVDNRHRQQ QQQQPCASSR LSLNQVQKQG QQEQENSSSA ETETQTTPTA TNTTSVSNGV  420
AILSREKKEE MRQQKRDEEG LHLLTLLLQC AEAVSADNFE EANMTLLEIS ELSTPFGTAA  480
QRVAAYFSEA MSARLVSSCL GIYAALPHSQ SYSQKMASAF QVFNGISPLV KFSHFTANQA  540
IQEAFEREER VHIIDLDIMQ GLQWPGLFHI LASRPGGPPY VRLTGLGTSM DALEATGKRL  600
SDFADKLGLP FEFVPLAEKV GNIDPERLNV SKREALAVHW LQHSLYDVTG SDTNTLWLLQ  660
RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SSYGEESEER HVVEQQLLSR  720
EIRNVLAVGG PSRSGEVKFH SWREKLQQCG FKGLSLSGNA ATQATLLLAM FPSEGYTLVE  780
DNGTLKLGWK DLSLLTASAW RPNFLAATDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04278033381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018838179.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2I4G2P80.0A0A2I4G2P8_JUGRE; protein SCARECROW-like
STRINGcassava4.1_001986m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein