PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00032082-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Trihelix | ||||||||
Protein Properties | Length: 572aa MW: 65050.8 Da PI: 8.446 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.3 | 4.8e-14 | 97 | 160 | 2 | 69 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegek 69 W ++evlaL+++r+ me+++ + We+vs+k+ ++ gf+rsp +Ckek+e+ ++++ + +k WALNUT_00032082-RA 97 WANEEVLALLRIRSGMENWFPEF-----TWEHVSRKLaEDVGFKRSPSKCKEKFEEESRYFNDNINYNK 160 ********************998.....9********7779*******************987665555 PP | |||||||
2 | trihelix | 94.9 | 7.4e-30 | 454 | 547 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rW+++evlaLi++r ++++ +++ ++ plWe++s+ m e g++rs+k+Ckekwen+nk++kk+k+ +kkr s +s+tcpyf WALNUT_00032082-RA 454 RWPRDEVLALINLRCSTDQYNNSNGgdqdkegiaKAPPLWERISQGMLELGYKRSAKRCKEKWENINKYFKKTKDANKKR-SLDSRTCPYF 543 8*************9988877764334455666699*******************************************8.9999****** PP trihelix 83 dqle 86 +ql WALNUT_00032082-RA 544 HQLS 547 **95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.5E-8 | 96 | 159 | No hit | No description |
PROSITE profile | PS50090 | 6.028 | 96 | 149 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.66E-23 | 453 | 527 | No hit | No description |
Pfam | PF13837 | 5.3E-19 | 453 | 547 | No hit | No description |
PROSITE profile | PS50090 | 6.365 | 454 | 520 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MEQYQITSST SWIASRTTLP SLSPSFPVLH AFSSPNIFPS YDHYDPSLSL PPNLLHPLHQ 60 QSPTHKDHQE QKQENNLVSM NLDTERQRSL PDPIESWANE EVLALLRIRS GMENWFPEFT 120 WEHVSRKLAE DVGFKRSPSK CKEKFEEESR YFNDNINYNK SYRFLSELEE LYQGHDHQNP 180 RVGAGKNQRI LEKPSGGEDN LGQSNLEVDS RDGTVGNKRF QDSHHENVQG KSKRKKRKRR 240 KKFEMLEGLC EKVVIKIMAQ QEEMHNKLLE DMVKRDEEKV AKEEAWKKQA MDRMNKELEI 300 MANEQAIAGV RHATIIEYLK QLTSSSSGSH CVEERAALLV HESLKVTTSS NSYPSSSSCS 360 LIQAPNPNHS SLISTQVINS ITPTSITKTL SHQNTSPALS PNTPDIPTSS SLPTASRNPN 420 SINTQKNPLT PISTWTQKVS QDSITNVKDN LGKRWPRDEV LALINLRCST DQYNNSNGGD 480 QDKEGIAKAP PLWERISQGM LELGYKRSAK RCKEKWENIN KYFKKTKDAN KKRSLDSRTC 540 PYFHQLSTLY MSQGTSQDVA APSEGPENIL TT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 241 | KSKRKKRKRRKK |
2 | 233 | 238 | RKKRKR |
3 | 233 | 241 | RKKRKRRKK |
4 | 234 | 239 | KKRKRR |
5 | 234 | 241 | KKRKRRKK |
6 | 235 | 240 | KRKRRK |
7 | 235 | 241 | KRKRRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018859401.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor GTL2-like | ||||
TrEMBL | A0A2I4HTC4 | 0.0 | A0A2I4HTC4_JUGRE; LOW QUALITY PROTEIN: trihelix transcription factor GTL2-like | ||||
STRING | POPTR_0013s03670.1 | 1e-172 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 4e-84 | Trihelix family protein |