PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031849-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 611aa    MW: 69261.4 Da    PI: 7.8633
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031849-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.26.8e-36491911128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++ 
  WALNUT_00031849-RA  49 LPAGVKFDPTDQELI-EHLEAKVEAKDmkshplI---DefitTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKIQt 134
                         799************.99*********5555442...133334776646**********.555666799******************7333 PP

                 NAM  80 .......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  WALNUT_00031849-RA 135 ecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191
                         4555544778************.999***********5547999999*********98 PP
2NAM49.61.3e-1529935177128
                 NAM  77 atksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         +  + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  WALNUT_00031849-RA 299 QGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 351
                         345678************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-3845210IPR003441NAC domain
PROSITE profilePS5100532.95649210IPR003441NAC domain
PfamPF023654.3E-1650191IPR003441NAC domain
PROSITE profilePS5100515.239216370IPR003441NAC domain
SuperFamilySSF1019411.15E-18301370IPR003441NAC domain
PfamPF023653.8E-6302351IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MNKSSSSTVG SISSSDLIDA KLEEHQMCGS KQCPGCGHKL EGKPDWLGLP AGVKFDPTDQ  60
ELIEHLEAKV EAKDMKSHPL IDEFITTIEG EDGICYTHPE KLPGVTRDGL SKHFFHRPSK  120
AYTTGTRKRR KIQTECDLQG GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQNEEEKEG ELVVSKIFYQ TQPRQCNWSE RSATTGEGSS EPNSRRDSGS  240
GSCSSSREMI PQRDHDQVSP PPGVNAHQMS AGIIHPKPSR GRMVEHETKK TXXXXXXXQG  300
GETRWHKTGK TRPVMVNGKQ KGCKKILVLY TNFGKNRKPE KTNWVMHQYH LGQNEEEKEG  360
ELVVSKIFYQ TQPRQCNWSE RSATTGEGSS EPNSRRDSGS GSCSSSREMI PQRDHDQVSP  420
PPGVNAHQMS AGYNAMDIQQ FKSDQHFSFA PFRKSFDEVG IGEVSTAREA QASAGTCEEM  480
GDQHQRPHPM AHHEHHHHRQ QQHHHAHQEI ATTAFHVSTR PSHPISTIIS PPPLHHTSII  540
NLDQDPYHIS RIMLENENFQ FSFLQYKPNP NVHMMHACIF LQESSIQNPQ EAEWLKYSSF  600
WPDPDNQDHH G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-124719113140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837821.10.0PREDICTED: NAC domain-containing protein 35-like isoform X3
SwissprotQ9M0F81e-138NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2I4G1Q10.0A0A2I4G1Q1_JUGRE; NAC domain-containing protein 35-like isoform X3
STRINGVIT_11s0016g02880.t011e-169(Vitis vinifera)
STRINGXP_002514192.11e-169(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-136NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]