PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00031758-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25066.2 Da PI: 8.9191 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64 | 1.6e-20 | 17 | 63 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r +tfskRr g+ KKA+EL +LC+aevav++fs+ gk + WALNUT_00031758-RA 17 KRIENEDDRLITFSKRRSGVYKKASELATLCGAEVAVVVFSPAGKPF 63 79*****************************************9855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.918 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-29 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-27 | 10 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.32E-34 | 10 | 81 | No hit | No description |
PRINTS | PR00404 | 1.6E-20 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-24 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-20 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-20 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAVEGKRTRG RQKIEMKRIE NEDDRLITFS KRRSGVYKKA SELATLCGAE VAVVVFSPAG 60 KPFSFGHPSV ESVTSRFLNQ NPDPHGDRTH PLVEAHRRVR INELSQQYTE LVSQLEVERE 120 RGKELQKLTK ARPGDDKGWW EAPIEELSCE DVQKMDASLR ELYNTVCNCM KEKHAAIAGT 180 FPSSSTFLSG YSAQGTTSSN PLFAANNASR ILFTMRSKTG NAGEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-16 | 10 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857787.1 | 1e-156 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2I4HNU9 | 1e-154 | A0A2I4HNU9_JUGRE; agamous-like MADS-box protein AGL62 | ||||
STRING | EOY27745 | 1e-77 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-48 | AGAMOUS-like 62 |