PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031740-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 419aa    MW: 46270.7 Da    PI: 5.0178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031740-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT+eEde+l+++++  G g W++ ++  g+ R++k+c++rw +yl
  WALNUT_00031740-RA 14 KGRWTAEEDEILIKYIQANGVGLWRSLPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding48.71.8e-1567111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ ++eEd+++v++++ +G+  W++Ia++++ gRt++++k++w+ +
  WALNUT_00031740-RA  67 RGNISAEEDQIIVKLHASMGNM-WSLIASHLP-GRTDNEIKNYWNAH 111
                         7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.285961IPR017930Myb domain
SuperFamilySSF466895.47E-2711108IPR009057Homeodomain-like
SMARTSM007173.1E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-211568IPR009057Homeodomain-like
CDDcd001671.39E-91661No hitNo description
PROSITE profilePS5129424.55562116IPR017930Myb domain
SMARTSM007173.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1367112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2469116IPR009057Homeodomain-like
CDDcd001671.19E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGRAPCCEKE GLKKGRWTAE EDEILIKYIQ ANGVGLWRSL PKNAGLLRCG KSCRLRWINY  60
LKDGLKRGNI SAEEDQIIVK LHASMGNMWS LIASHLPGRT DNEIKNYWNA HLSRKIHSFT  120
KVSGGTSLAI IVDIPVKRRG GRTSRRCMKK NKNYYVQKNN VGRIPTIKPI NDSVFNPTDQ  180
EIPSVHENPT PASAKEIITV SSTATDDGVV LDPHVVLDKE RESVVSGCHH QATEKYDQNQ  240
MAVCPSSSNG QKETEILGPY VSEESINDGG LLSIDYILSN NALLDSNEFL TTSESRSCKP  300
EAVFEDKSSS NTEFLCVDKL LAMESTNHEY MEISGANNCS NIGDNGEWCS CNSPLTSGFA  360
EFYGVDNGGL WDGVGQGNEI WNDQKENVLS SLWEGDGDSC NLTDTDPDKQ DALVAWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857134.10.0PREDICTED: myb-related protein Zm1-like
TrEMBLA0A2I4HLT50.0A0A2I4HLT5_JUGRE; myb-related protein Zm1-like
STRINGEOX952261e-101(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-71myb domain protein 111