PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031507-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 284aa MW: 32237.9 Da PI: 5.311

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031507-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.8	9e-39	26	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaC+++rrkCa+dC+lapyfp++++k+f n+hklFG+sn++k++k+l++ ++e+am+++++++++ra+dPv G++++i++lq+ ++ k WALNUT_00031507-RA 26 ACAACRYQRRKCAPDCILAPYFPHDRQKQFLNAHKLFGVSNIIKIIKNLDQPDKEEAMRTIIFQSNVRANDPVGGCCRMIRDLQRLIDYNK 116 7**************************************************************************************** PP DUF260 92 aelallkee 100 ael+ + ++ WALNUT_00031507-RA 117 AELDIVLHQ 125 *988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.434	25	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-36	26	121	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MYNKKQTYSL QGMNLRPRHG NGTTQACAAC RYQRRKCAPD CILAPYFPHD RQKQFLNAHK 60 LFGVSNIIKI IKNLDQPDKE EAMRTIIFQS NVRANDPVGG CCRMIRDLQR LIDYNKAELD 120 IVLHQLAICR AQAHDQQPDH SQIPNVLDAA FNSENDYINI SADPTLGSCN ASVLQYHYLG 180 QHQEPYFVIN NDSLQEDVNA WAVQDSLSMS SLHIKHGADD ECDDTKPVFE RSCERNEMNY 240 EGMLRIGNAE DGSCIQQAHD HDDINDDDQD HDLKGAATLF TLTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	22	120	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	22	120	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018808508.1	0.0	PREDICTED: LOB domain-containing protein 22-like isoform X1
Swissprot	Q9LRW1	5e-60	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2I4DMY6	0.0	A0A2I4DMY6_JUGRE; LOB domain-containing protein 22-like isoform X1
STRING	cassava4.1_022118m	4e-78	(Manihot esculenta)
STRING	XP_002527399.1	3e-78	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-62	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]