PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00031245-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 22810.7 Da PI: 4.2136 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.4e-10 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd++l+ +++++G g+W++ +++ WALNUT_00031245-RA 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAK 43 79***********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-13 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.306 | 9 | 40 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.08E-8 | 11 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-9 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.35E-6 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAENAPPV MTTAGIGETS 60 MPLIEFVGTT SGSSETGIVK DEGEQDWKPF ENSTHWSEYK EGMENSLSFT SNLHDISMSM 120 EGTWTSPESL RTSRGHVHFG NVMGDQEGFT NLLLNNFDDH QSLSDGGDDS ENGSGSGSGS 180 GSDYYEDNKN YWNSILNLVN SSPSDSPMF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 2e-31 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018806958.1 | 1e-110 | PREDICTED: uncharacterized protein LOC108980474 | ||||
TrEMBL | A0A2I4DII6 | 1e-109 | A0A2I4DII6_JUGRE; uncharacterized protein LOC108980474 | ||||
STRING | EOY03526 | 3e-67 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 4e-25 | myb domain protein 16 |