PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031212-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB

Protein Properties

Length: 294aa MW: 31111.5 Da PI: 8.0603

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031212-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	11	55	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++e d+ + +a + ++ + +W++I++ ++ g+t +++k+++ WALNUT_00031212-RA 11 VWSKEQDKAFENALATHPEDasdRWEKISADVP-GKTIEEIKHHYE 55 6******************************.********96 PP
2	Myb_DNA-binding	42	2.1e-13	121	165	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky WALNUT_00031212-RA 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.3E-9	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.76E-11	10	66	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-9	11	55	IPR001005	SANT/Myb domain
CDD	cd00167	2.41E-9	12	58	No hit	No description
PROSITE profile	PS50090	6.934	12	58	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.3E-5	12	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.581	113	170	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-16	116	171	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-17	118	168	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-10	118	168	IPR001005	SANT/Myb domain
CDD	cd00167	8.30E-10	121	166	No hit	No description
Pfam	PF00249	2.7E-11	121	165	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-10	121	164	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTVDETGSNS VWSKEQDKAF ENALATHPED ASDRWEKISA DVPGKTIEEI KHHYELLVDD 60 VSLIESGRVP LPSYSSVEGS ASHAGDEGNG KKGGHLGNYN SESNHGSKAS RSDQERRKGI 120 AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS 180 IHDITSVGNG DISAPQGPIT GQTNGSAGGS SGKPTKQPPQ PSAGPAGIGV YGAPTMGQPI 240 GGSLVSAVGT PVSLPTGAHM AYGVRAPVPG VVVPGAPMNM GPMAYPMPHA SAHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-19	7	80	6	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00500	DAP	Transfer from AT5G08520	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807816.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	1e-127	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2I4DKY9	0.0	A0A2I4DKY9_JUGRE; transcription factor DIVARICATA-like
STRING	XP_004149865.1	1e-177	(Cucumis sativus)
STRING	XP_004172523.1	1e-177	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4694	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-115	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]