PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00030998-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NF-YB | ||||||||
Protein Properties | Length: 239aa MW: 27177 Da PI: 9.3271 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 30.6 | 8.3e-10 | 12 | 49 | 43 | 89 |
NF-YB 43 isfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 isf+t+eas+ ++dl wal+tlGf+dyveplkvyl++ WALNUT_00030998-RA 12 ISFITGEASKG---------RSEDLRWALTTLGFKDYVEPLKVYLQR 49 78888888843.........369**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.44E-5 | 3 | 63 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.5E-6 | 4 | 61 | IPR009072 | Histone-fold |
Gene3D | G3DSA:2.60.40.790 | 2.2E-57 | 93 | 238 | IPR008978 | HSP20-like chaperone |
SuperFamily | SSF49764 | 2.88E-45 | 102 | 239 | IPR008978 | HSP20-like chaperone |
CDD | cd06472 | 2.25E-44 | 133 | 221 | No hit | No description |
Pfam | PF00011 | 9.0E-32 | 135 | 238 | IPR002068 | Alpha crystallin/Hsp20 domain |
PROSITE profile | PS01031 | 26.411 | 135 | 224 | IPR002068 | Alpha crystallin/Hsp20 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKYITKKMKF IISFITGEAS KGRSEDLRWA LTTLGFKDYV EPLKVYLQRE GGFGTGKAEL 60 QRRRRERGGT DDISFAPNFP DMSLVPSLFG GRRTNVFDPF SLDLWDPFDG LLSSAVANVP 120 PSARETAALA NLRIDWKETP EAHVFHADLP GLKKEEVKVE VEEGRILQIS GERSKEQEEK 180 NDKWHRIERS SGKFLRRFRL PENAKLDQVK ASMENGVLTV TVPKEEEKKP EVKPIEISG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gme_A | 1e-59 | 92 | 239 | 5 | 151 | HEAT SHOCK PROTEIN 16.9B |
1gme_B | 1e-59 | 92 | 239 | 5 | 151 | HEAT SHOCK PROTEIN 16.9B |
1gme_C | 1e-59 | 92 | 239 | 5 | 151 | HEAT SHOCK PROTEIN 16.9B |
1gme_D | 1e-59 | 92 | 239 | 5 | 151 | HEAT SHOCK PROTEIN 16.9B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018855325.1 | 1e-110 | PREDICTED: 17.4 kDa class I heat shock protein-like | ||||
Swissprot | P13853 | 6e-83 | HS17C_ARATH; 17.6 kDa class I heat shock protein 3 | ||||
TrEMBL | A0A2I4HGN7 | 1e-108 | A0A2I4HGN7_JUGRE; 17.4 kDa class I heat shock protein-like | ||||
STRING | XP_006488309.1 | 5e-88 | (Citrus sinensis) | ||||
STRING | XP_006424811.1 | 5e-88 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 9e-12 | nuclear factor Y, subunit B3 |
Publications ? help Back to Top | |||
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