PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030840-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 244aa    MW: 27362.9 Da    PI: 9.6422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030840-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
  WALNUT_00030840-RA 14 KGAWSKQEDQKLIDYIQTHGEGSWSSLPKAAGLDRCGKSCRLRWINYL 61
                        79********************************************97 PP

2Myb_DNA-binding52.31.3e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  WALNUT_00030840-RA  67 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 111
                         899*******************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.885961IPR017930Myb domain
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-2913108IPR009057Homeodomain-like
PfamPF002498.2E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231568IPR009057Homeodomain-like
CDDcd001674.41E-111661No hitNo description
PROSITE profilePS5129425.65562116IPR017930Myb domain
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002495.2E-1567111IPR001005SANT/Myb domain
CDDcd001672.70E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRKPCSKQEG TNNKGAWSKQ EDQKLIDYIQ THGEGSWSSL PKAAGLDRCG KSCRLRWINY  60
LRPDIKRGNF GQDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HIRRKLISMG  120
IDPNNHRLNQ QINPPRPQPK YVNVVSVAAT TSSESTNYDH DCKPPPLKSV GNADHRVSDG  180
TASSSVDQDE MPAANSLALN LDLTIAFRPS PVTQLVQEKR QSSISMSTKQ VEREPVLVPT  240
LLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817041.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_018853260.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_018856087.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_018859205.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ9SZP12e-71MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A2I4HST40.0A0A2I4HST4_JUGRE; transcription repressor MYB6-like
STRINGXP_008229231.11e-102(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-71myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]