PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00030817-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 364aa MW: 40291.5 Da PI: 9.8263

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00030817-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.8	2.8e-06	99	126	2	29
HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPk 29 + hn+rEr RR++iN+ + L + + WALNUT_00030817-RA 99 KLDHNARERDRRKKINTLAQSLSLSITE 126 678**************99988766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-4	98	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF54631	2.4E-32	213	360	No hit	No description
PROSITE profile	PS51371	10.675	226	285	IPR000644	CBS domain
CDD	cd04623	2.49E-51	228	344	No hit	No description
SMART	SM00116	0.0025	229	279	IPR000644	CBS domain
Gene3D	G3DSA:3.10.580.10	2.8E-30	232	347	No hit	No description
Pfam	PF00571	4.7E-7	233	278	IPR000644	CBS domain
Pfam	PF00571	7.5E-13	290	346	IPR000644	CBS domain
PROSITE profile	PS51371	14.18	294	352	IPR000644	CBS domain
SMART	SM00116	5.0E-11	299	346	IPR000644	CBS domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0045454	Biological Process	cell redox homeostasis
GO:0005739	Cellular Component	mitochondrion
GO:0046983	Molecular Function	protein dimerization activity
GO:0050897	Molecular Function	cobalt ion binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MRPSNKVDWV ISNNLAIMFA SPPPTPFSIM AEPLDHQDPK SHDCKSYMIN SDINITAFES 60 LVHCPHPSGS TKVGVKLNCS TPSTLMSSEL ISTITTVKKL DHNARERDRR KKINTLAQSL 120 SLSITELAAT ALLESGTPLF RLLSPYPIRI HLYKRNQGKM QGALHSFLSR GSIIKNAVIQ 180 HFRLANPLIQ PVIFSRSHSV TSARIEEHGF ESTTIADVLK AKGKSADGSW LWCTMDDTVY 240 DAVQSMTQHN VGALVVVKPG EQKSIAGIIT ERDYLRKIIV QGRSSKSTKV GDIMTEENKL 300 ITVTPDTKVL RAMQLMTDNR IRHIPVIEGN GMVGMVSIGD VVRAVVSEHR EELNRLNAFI 360 QGGY

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MRPSNKVDWV ISNNLAIMFA SPPPTPFSIM AEPLDHQDPK SHDCKSYMIN SDINITAFES  60
LVHCPHPSGS TKVGVKLNCS TPSTLMSSEL ISTITTVKKL DHNARERDRR KKINTLAQSL  120
SLSITELAAT ALLESGTPLF RLLSPYPIRI HLYKRNQGKM QGALHSFLSR GSIIKNAVIQ  180
HFRLANPLIQ PVIFSRSHSV TSARIEEHGF ESTTIADVLK AKGKSADGSW LWCTMDDTVY  240
DAVQSMTQHN VGALVVVKPG EQKSIAGIIT ERDYLRKIIV QGRSSKSTKV GDIMTEENKL  300
ITVTPDTKVL RAMQLMTDNR IRHIPVIEGN GMVGMVSIGD VVRAVVSEHR EELNRLNAFI  360
QGGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4fry_A	8e-34	209	362	3	150	Putative signal-transduction protein with CBS domains
4fry_B	8e-34	209	362	3	150	Putative signal-transduction protein with CBS domains
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831854.1	1e-149	PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
Swissprot	Q9LEV3	1e-121	CBSX3_ARATH; CBS domain-containing protein CBSX3, mitochondrial
TrEMBL	A0A2I4FJN5	1e-147	A0A2I4FJN5_JUGRE; CBS domain-containing protein CBSX3, mitochondrial-like
STRING	XP_006464969.1	1e-128	(Citrus sinensis)

Publications ? help Back to Top
Kruft V,Eubel H,Jänsch L,Werhahn W,Braun HP Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Plant Physiol., 2001. 127(4): p. 1694-710 [PMID:11743114] Rouhier N, et al. Identification of plant glutaredoxin targets. Antioxid. Redox Signal., 2005 Jul-Aug. 7(7-8): p. 919-29 [PMID:15998247] Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Jiang Y,Yang B,Harris NS,Deyholos MK Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J. Exp. Bot., 2007. 58(13): p. 3591-607 [PMID:17916636] Lee CP,Eubel H,O'Toole N,Millar AH Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Mol. Cell Proteomics, 2008. 7(7): p. 1297-316 [PMID:18385124] Kushwaha HR,Singh AK,Sopory SK,Singla-Pareek SL,Pareek A Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation. BMC Genomics, 2009. 10: p. 200 [PMID:19400948] Tan YF,O'Toole N,Taylor NL,Millar AH Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Plant Physiol., 2010. 152(2): p. 747-61 [PMID:20018591] Hajduch M, et al. Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. Plant Physiol., 2010. 152(4): p. 2078-87 [PMID:20118269] Yoo KS, et al. Single cystathionine β-synthase domain-containing proteins modulate development by regulating the thioredoxin system in Arabidopsis. Plant Cell, 2011. 23(10): p. 3577-94 [PMID:22021414] Ok SH,Yoo KS,Shin JS CBSXs are sensor relay proteins sensing adenosine-containing ligands in Arabidopsis. Plant Signal Behav, 2012. 7(6): p. 664-7 [PMID:22580706]