PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030774-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family RAV
Protein Properties Length: 379aa    MW: 41674.9 Da    PI: 9.5212
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030774-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.96e-1467115155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  WALNUT_00030774-RA  67 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 115
                         89****9888.8*********3.....5**********99*************98 PP
2B3103.79.7e-33204303196
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k+ tpsdv+k++rlv+pk++ae+h     g++++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++  
  WALNUT_00030774-RA 204 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqTGSTTKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDKNLKAGDIVSFQRSTG 294
                         89****************************77889****************************************************8866 PP

                         SEE..EEEE CS
                  B3  88 sefelvvkv 96 
                          +++l++ +
  WALNUT_00030774-RA 295 PDKQLYIDW 303
                         777787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1767123IPR016177DNA-binding domain
CDDcd000181.47E-2567122No hitNo description
PfamPF008479.3E-967115IPR001471AP2/ERF domain
PROSITE profilePS5103220.12668123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2068124IPR001471AP2/ERF domain
SMARTSM003801.1E-2868129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.7E-41195306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-30202303IPR015300DNA-binding pseudobarrel domain
CDDcd100176.52E-30203292No hitNo description
PROSITE profilePS5086314.395204307IPR003340B3 DNA binding domain
SMARTSM010196.6E-26204307IPR003340B3 DNA binding domain
PfamPF023621.4E-29204303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEGSCIDEIS SSTSTEYSIS ISPATLSPSP ATKSPESLCR VGSGTTSTIL DSESGIEAES  60
RGKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEED EAAKAYDIAA QRFRGRDAVT  120
NFKSLASAST TEDQDHDIET AFLNSHSKAE IVDMLRKHTY NDELEQSKRN LGLDGNGGNR  180
SKAEGFLCNP FGSGRAFKAR EQLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQTGSTTKG  240
VLLNFEDVGG KVWRFRYSYW NSSQSYVLTK GWSRFVKDKN LKAGDIVSFQ RSTGPDKQLY  300
IDWKGRTGSG AGVVVGLSNP VFPVQPVQMV RLFGVNILQV PVVGVVESTI IGGYHGKRTR  360
ERDLLALECS KKQRMLGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5920130911120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018859781.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9C6M51e-148RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2I4HUE50.0A0A2I4HUE5_JUGRE; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRINGVIT_01s0011g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-144RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]