PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030618-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 363aa    MW: 40842.1 Da    PI: 5.5982
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030618-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.11.1e-32141232489
                 TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg..... 88 
                          kdrh k++T++g RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+++ak+ai +l++++ +++  +c+ +ss++s++  +++     
  WALNUT_00030618-RA 141 LKDRHGKVSTSKGTRDRRLRLSASTAIQFYDVQDRLGYDRPSKAIDWLMEKAKAAINALANSPRQNQdASCTINSSQQSDKDLEKRglnfq 231
                         69************************************************************44444134544444444432222123333 PP

                 TCP  89 k 89 
                         +
  WALNUT_00030618-RA 232 H 232
                         0 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-30141234IPR005333Transcription factor, TCP
PROSITE profilePS5136927.907141199IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MQNLEENSMS CPTLFSLRTH LLDSGPYQVL QPESVKDEEE EKEDHEVQPN ENEEEDDDEQ  60
DQQAQKRIRG NYQHVQRSPL SNTISSSAML ASRQSATEYG SFVERSMQAG IHEPSSILRS  120
KRMKGEVVKV HSGRFARSRG LKDRHGKVST SKGTRDRRLR LSASTAIQFY DVQDRLGYDR  180
PSKAIDWLME KAKAAINALA NSPRQNQDAS CTINSSQQSD KDLEKRGLNF QHQSELGIMM  240
GSNCGYDRQN QLHMNDIPTN SLSLVSESAT TPSSSIQLQD YPPKLKQDVC LSLQSLKKQV  300
LDAPHHASPI NFAEEAVNSA SFLSDLSPSE IGWFQPHRDW NSDTGHGEEE FVFNSLPQLP  360
QPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-17147199254Putative transcription factor PCF6
5zkt_B2e-17147199254Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858597.10.0PREDICTED: transcription factor TCP4-like
TrEMBLA0A2I4HR280.0A0A2I4HR28_JUGRE; transcription factor TCP4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.13e-32TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3