PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030451-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 362aa    MW: 40491.9 Da    PI: 7.5646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030451-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12186232455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  WALNUT_00030451-RA 186 DHVIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 232
                         6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10186232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16187247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-12187236No hitNo description
SMARTSM003532.1E-14188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.841292362IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEISSAKWIS ELTVEDPNYL SHQYDLNPFD YSLDGLDHDF QSISAESYSS YPVLKTPKSI  60
HTFNIGVGEN IPQTGMDPRP AKLLKTSSWN SFSTDRIASK APASSSLSQL ISFENSNSPP  120
ASYQQFYGLD CTMNPKNEAG SDHGNRSFPN LISEKPTSMM QNCSPKQEQF PKRAGSTTRT  180
PLHAQDHVIA ERKRREKLSQ RFIALSAIVP GLKKMDKASV LGDAIKYLKQ LQERVKILEE  240
QTAKKTMETV VFVKKTRISA DDDTSTSDEN SNSHSDEPLP EVEARISEKN VLIRIYCEKR  300
KGCTAKILSE IEKLHLTITT SSILPFGNST VDMTVVAQMD VDFCMTAKDL ARNLRQALLK  360
LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13186241863Transcription factor MYC2
5gnj_B4e-13186241863Transcription factor MYC2
5gnj_E4e-13186241863Transcription factor MYC2
5gnj_F4e-13186241863Transcription factor MYC2
5gnj_G4e-13186241863Transcription factor MYC2
5gnj_I4e-13186241863Transcription factor MYC2
5gnj_M4e-13186241863Transcription factor MYC2
5gnj_N4e-13186241863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195ERKRRE
2191196RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817560.10.0PREDICTED: transcription factor bHLH18-like isoform X2
TrEMBLA0A2I4EDT90.0A0A2I4EDT9_JUGRE; transcription factor bHLH18-like isoform X2
STRINGcassava4.1_010938m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-65bHLH family protein