PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00030349-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 316aa MW: 35475.9 Da PI: 9.9116 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 135 | 179 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky WALNUT_00030349-RA 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 179 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.835 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-8 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.22E-10 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.92E-7 | 28 | 75 | No hit | No description |
PROSITE profile | PS51294 | 20.728 | 128 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-17 | 129 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-17 | 131 | 183 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 132 | 179 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 132 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-11 | 135 | 180 | No hit | No description |
Pfam | PF00249 | 5.7E-13 | 135 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MKWEMEILSP ATYISNANWL LDESKSTKWT PAENKMFENA LAVYDKESPD RWPKVAAMIP 60 GKTVLDVMRQ YEELVADINN IEAGLVTIPG YAASPFTLDG VNSNGYDGFR QSYGIGGKRS 120 SSARSAEQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVITRTPT QVASHAQKYF 180 IRQLSGGKDK RRASIHDITT VNIVDMKMPS PDSKRPSSPE HSTVLHPQQQ QQQQQRNSAA 240 ATPRTPFQWN QSNGGATMAF NTTHGNVFMT SPYGIVSSYG QKMQGHNLQR GVSHESYMGA 300 PNMVFQMHSA QHYPLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 29 | 91 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018817557.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-139 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2I4EDT2 | 0.0 | A0A2I4EDT2_JUGRE; transcription factor DIVARICATA-like | ||||
STRING | Gorai.009G093700.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-99 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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