PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030246-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 297aa    MW: 33936.6 Da    PI: 5.9854
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030246-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-182673148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd  l+ +v+ +G g+W+++ar+ g++Rt+k+c++rw++yl
  WALNUT_00030246-RA 26 RGPWTDEEDFTLKGYVTIHGEGRWNSVARCTGLKRTGKSCRLRWLNYL 73
                        89********************************************97 PP
2Myb_DNA-binding47.34.8e-1579122146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ + +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  WALNUT_00030246-RA  79 RGNISLQEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 122
                         788899****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5092173IPR017930Myb domain
SuperFamilySSF466894.79E-3023120IPR009057Homeodomain-like
SMARTSM007179.0E-142575IPR001005SANT/Myb domain
PfamPF002492.3E-152673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-222780IPR009057Homeodomain-like
CDDcd001671.73E-102873No hitNo description
PROSITE profilePS5129422.85374128IPR017930Myb domain
SMARTSM007179.9E-1478126IPR001005SANT/Myb domain
PfamPF002495.2E-1479122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2281127IPR009057Homeodomain-like
CDDcd001677.61E-799122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEVQVIRGCW SAKHEMSSEE GMDIRRGPWT DEEDFTLKGY VTIHGEGRWN SVARCTGLKR  60
TGKSCRLRWL NYLRPDVKRG NISLQEQLLI LELHSRWGNR WSKIAQYLPG RTDNEIKNYW  120
RTRVQKQAKQ LKCDVNSKQF RDTMRYVWMP RLMERIRAES ESNSDEPTTG YSTESTTDHF  180
PNNSTGPNSS YQVATSRSDP AVEPYFMHAI SSGSPAASSE AQVSSISELS ECYNIPGGNY  240
TDNSLNGSGL CQKGLEMDIP SLEHSNGWCG GGGDTLDSLW NDENMWFLRQ QLYDYEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-232312824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848935.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY38e-81MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2I4GYF30.0A0A2I4GYF3_JUGRE; transcription factor MYB108-like
STRINGVIT_07s0005g01950.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-80myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]