PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00029835-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 323aa MW: 35958.4 Da PI: 6.7826 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.4e-38 | 40 | 99 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+ sqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s WALNUT_00029835-RA 40 HHQALKCPRCDSLNTKFCYYNNYNQSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRS 99 57899****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.6E-33 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-24 | 43 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.208 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MQEIHSIGGG GRLFGGVGGG GADRRLRLHH QYHNHQQQNH HQALKCPRCD SLNTKFCYYN 60 NYNQSQPRHF CKSCRRYWTK GGVLRNVPVG GGCRKAKRSK PKPASSDTST PQPQRQRERK 120 SNSNSSSESS SLTATNTNAA TEAVSTEVPS LNSYSNLLNV QDSKLFISNP SFETGLLEQG 180 SDCGIFSEIG SFTSLITASS EALPFGFNGV SETTPFRLNH QSHDRHQQQQ WQQEEQQQCK 240 AMMRGMVGEE TEIQQEITGE LVDQTVQLDL PSLQDRSSGG GFGSLDWQVS GDQDLFDLPN 300 TVDQAYWSQS QWADQDHPSL YLP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP662917 | 6e-60 | KP662917.1 Cajanus cajan Dof25 (Dof25) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018856839.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A2I4HKZ9 | 0.0 | A0A2I4HKZ9_JUGRE; dof zinc finger protein DOF5.4-like | ||||
STRING | evm.model.supercontig_3.229 | 1e-107 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-46 | OBF binding protein 4 |