PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029775-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 357aa    MW: 40048 Da    PI: 5.5487
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029775-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.9e-201158148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+d+++++G g+W++ ++  g++R++k+c++rw +yl
  WALNUT_00029775-RA 11 KGPWTPEEDQKLIDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 58
                        79********************************************97 PP
2Myb_DNA-binding56.18.7e-1864109148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE+ +++++++ lG++ W++Ia++++ gRt++++k++w+++l
  WALNUT_00029775-RA  64 RGKFSEEEEHIIINLHAVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 109
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.62658IPR017930Myb domain
SuperFamilySSF466891.61E-328105IPR009057Homeodomain-like
SMARTSM007172.6E-161060IPR001005SANT/Myb domain
PfamPF002491.8E-181158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-261265IPR009057Homeodomain-like
CDDcd001674.10E-131358No hitNo description
PROSITE profilePS5129427.33359113IPR017930Myb domain
SMARTSM007173.1E-1663111IPR001005SANT/Myb domain
PfamPF002491.2E-1664109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2866113IPR009057Homeodomain-like
CDDcd001673.16E-1266109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMEIDENDLK KGPWTPEEDQ KLIDYIQKHG HGSWRALPKL AGLNRCGKSC RLRWTNYLRP  60
DIKRGKFSEE EEHIIINLHA VLGNKWSAIA SHLPGRTDNE IKNFWNTHLK KKLLQMGIDP  120
VTHRPRTDLD LLSNLPQLLA AANLANPWVD NVLRLQSDAT QLAKIQVLNN IIQVLSSAPA  180
PNMEAINHFR SSSILPDQHQ LYEYLQMNSK LEGLLVNGSI GFPSTHDQMQ SKLSNYEANF  240
QLPQLSGDHQ PAQNIINGLK NYTSSNSDCV DQVANSSYSI PPSNVLPNLV SASPDQCSSI  300
VSQIENQINS NDIISNDPSS ISTTFEPLGD IMENIEASDS YWKDFIEQAS SQSWPMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-3281134108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1086501e-51AB108650.1 Lotus japonicus MYB103 gene for transcription factor MYB103, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817165.10.0PREDICTED: transcription factor WER-like
SwissprotQ9S9Z23e-87MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2I4ECP40.0A0A2I4ECP4_JUGRE; transcription factor WER-like
STRINGXP_006443249.11e-143(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.16e-89myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]