PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029473-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 489aa    MW: 53869.5 Da    PI: 8.0766
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029473-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.11.3e-19155242187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk +++++ ++   s+s++p+f+q+e+
  WALNUT_00029473-RA 155 EWSDAAIACLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQTKSVEQCKNKVDNLKKRYKLERQRMTNG-GLSVSHWPWFKQMEH 242
                         5*************************************777778899************************99.89999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-21153243No hitNo description
Gene3DG3DSA:3.40.1160.104.6E-43291447IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536339.16E-32296447IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.3E-8299446IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASCDDFSLL DDDHHHHHQS NPNHPQIPAS HHLHQTYAPH RFATRSNPVH APPPPSQSII  60
SPSAASPQKI SGAEEEEEED DGEDYNDAAF CSNPYDNGTD PNRVRIVDLR TEKRKDREEL  120
SDGATNYGYN NNKKSKPSGG AGTSGGGDYR KDREEWSDAA IACLLDAYTE KFTQLNRGNL  180
RGRDWEEVAA TVSERCEKQT KSVEQCKNKV DNLKKRYKLE RQRMTNGGLS VSHWPWFKQM  240
EHIVGNSLPV KALTDEDKGG GSSASTPRQT KRSTIAMPGP VGQVNNVKPK SISNPRWRRV  300
VFKVSGVALA GSGPNNIDPK VVTLIAREVA MACRLGVEVA IVVGGRNFFC GDTWVTTTGL  360
ERCTAYQIGM MATVMNSVLL QSALEKMGVQ TRVQTAFSML EAAEPYSRQR AIRHLEKGRV  420
VIFGGIGAGF GNPPFSTDTA AAVRASESMS LPHPKLLIFF YLYWCTWSLS LSLTCTCAYI  480
DKGTIVSHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-392914473155Uridylate kinase
3ek5_B2e-392914473155Uridylate kinase
3ek5_C2e-392914473155Uridylate kinase
3ek5_D2e-392914473155Uridylate kinase
3ek5_E2e-392914473155Uridylate kinase
3ek5_F2e-392914473155Uridylate kinase
3ek6_A2e-392914473155Uridylate kinase
3ek6_B2e-392914473155Uridylate kinase
3ek6_C2e-392914473155Uridylate kinase
3ek6_D2e-392914473155Uridylate kinase
3ek6_E2e-392914473155Uridylate kinase
3ek6_F2e-392914473155Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269276TKRSTIAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805939.10.0PREDICTED: uncharacterized protein LOC108979680, partial
TrEMBLA0A2I4DFK60.0A0A2I4DFK6_JUGRE; uncharacterized protein LOC108979680
STRINGXP_008442786.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-157Trihelix family protein