PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029451-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 303aa    MW: 34528.4 Da    PI: 6.9525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029451-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-162067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll++++  +G g W++ a+  g++Rt+k+c++rw++yl
  WALNUT_00029451-RA 20 RGPWTLEEDTLLIHYISHHGEGKWNLAAKSSGLRRTGKSCRLRWLNYL 67
                        89********************************************97 PP
2Myb_DNA-binding52.61e-1673116146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  WALNUT_00029451-RA  73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3141567IPR017930Myb domain
SuperFamilySSF466891.72E-3018114IPR009057Homeodomain-like
SMARTSM007176.4E-131969IPR001005SANT/Myb domain
PfamPF002498.1E-152067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-212174IPR009057Homeodomain-like
CDDcd001674.18E-102267No hitNo description
PROSITE profilePS5129425.49468122IPR017930Myb domain
SMARTSM007172.7E-1572120IPR001005SANT/Myb domain
PfamPF002491.0E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2375121IPR009057Homeodomain-like
CDDcd001678.39E-1277116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSSCSKSLSS SSEDDSELRR GPWTLEEDTL LIHYISHHGE GKWNLAAKSS GLRRTGKSCR  60
LRWLNYLKPD VKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
QARLFKIDTN STAFQEIIRF YWMPRLLQKI EESSSSSGMI FQNSAIPQPL DTAYQHSAAA  180
AQVPPGQGPL YLSQSLNHHE QNPDSDQHCT SSVNFSQIPQ LSEYPSSGPF HAIADNEYET  240
FLKGCYHADN SNYEMETLNL GSIRAPGNFE NLISNSHAVE RNWVDNDFSG GLCNMEGLWQ  300
TRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25171294110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018852835.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A2I4H9K70.0A0A2I4H9K7_JUGRE; transcription factor MYB24-like
STRINGVIT_17s0000g03560.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.15e-78myb domain protein 116