PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029408-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 492aa    MW: 54991.4 Da    PI: 7.5678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029408-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-18145191148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  WALNUT_00029408-RA 145 KGQWTDEEDRKLIKLVKQHGVRKWAQIAEKLV-GRAGKQCRERWHNHL 191
                         799*****************************.*************97 PP
2Myb_DNA-binding56.94.7e-18197239145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eE+ llv+a+++ G++ W+ Ia++++ gRt++ +k++w+
  WALNUT_00029408-RA 197 KDSWSEEEERLLVEAHAKVGNR-WAEIAKCIP-GRTENAIKNHWN 239
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.056140195IPR017930Myb domain
SuperFamilySSF466892.12E-30144238IPR009057Homeodomain-like
SMARTSM007173.0E-17144193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-27146198IPR009057Homeodomain-like
PfamPF139211.1E-20148208No hitNo description
CDDcd001673.26E-16148191No hitNo description
PROSITE profilePS5129420.509196246IPR017930Myb domain
SMARTSM007177.7E-18196244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-21199244IPR009057Homeodomain-like
CDDcd001672.96E-14199242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEGGGEGTAC CYGNSQRNPS ICLPGLIPFT AIDRFLQYGD QNHHFSQQQA QNHAKNKEIL  60
ISDTGLCSFT PYRDAIGGGF SCPNINPEVS FADGFFVDEE PLNWIYEKIP IMAAGLKQEV  120
KVTRSKSSKG AGKNARKGSS EALIKGQWTD EEDRKLIKLV KQHGVRKWAQ IAEKLVGRAG  180
KQCRERWHNH LRPDIKKDSW SEEEERLLVE AHAKVGNRWA EIAKCIPGRT ENAIKNHWNA  240
TKRRQNSRRK NKPTEMNKKG KPQYSSLLQD YIKSKTLNSK TFTASADAAI QSTTTPTSST  300
LSGKDPSTKF NYFLPDQLSE SSSQYCDSPT LISQTYDEEL LFMQNLFANH YDQPPVDDST  360
KATAQMVAET FHADHFKDSS TDVVESGTGL ASFTSNPNLQ KNNKLQTIDT GAPATTHLHS  420
DIYLSYLLNG TANSLLSNDY NCCYDNINMN MDLHMTNQAY SWNGSRKEMD LIEFVALNSH  480
LSQGSNSSVF LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-461432452104C-Myb DNA-Binding Domain
1msf_C1e-461432452104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812796.10.0PREDICTED: myb-like protein A
TrEMBLA0A2I4E0790.0A0A2I4E079_JUGRE; myb-like protein A
STRINGPOPTR_0009s04870.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-81myb domain protein 119