PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029393-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 743aa    MW: 82169.9 Da    PI: 5.6848
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029393-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.2e-2064119156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  WALNUT_00029393-RA  64 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 119
                         688999***********************************************998 PP
2START194.45.4e-612794831206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEE CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetlakaetl 82 
                         ela +a++elvk+a+ +ep+W++      + + +de+ ++f+++ +     ++ ea+r+++vv+m++ +lve ++d+  qW++ +      
  WALNUT_00029393-RA 279 ELAVAAMEELVKMAQMGEPLWMTNQldgtSTLHEDEYFRTFPRGIGprptgFKCEASRETAVVIMNHINLVELVMDVD-QWSTVFS----- 363
                         57899**************************************999********************************.*******..... PP

                         EEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
               START  83 evissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                           +s + +l+ m+ae+q++splvp R++++vRy++ql++g+w++vdvS+ds ++ p     vR++++pSg+li++++ng+skvtwvehv++
  WALNUT_00029393-RA 364 GIVSRAMTLE-MTAEFQVPSPLVPtRESYYVRYCKQLSDGTWAVVDVSLDSLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHVEV 449
                         5555555554.89*****************************************995....****************************** PP

                         -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                         ++r +h+l+r+lv+sg+a+gak+wvatl+rqce+
  WALNUT_00029393-RA 450 DDRGVHNLYRQLVSSGHAFGAKRWVATLDRQCER 483
                         ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2243119IPR009057Homeodomain-like
SuperFamilySSF466896.68E-1949119IPR009057Homeodomain-like
PROSITE profilePS5007116.26161121IPR001356Homeobox domain
SMARTSM003891.0E-1662125IPR001356Homeobox domain
PfamPF000461.4E-1764119IPR001356Homeobox domain
CDDcd000869.67E-1964119No hitNo description
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PROSITE profilePS5084839.011270486IPR002913START domain
SuperFamilySSF559617.56E-34270485No hitNo description
CDDcd088752.91E-116274482No hitNo description
SMARTSM002348.1E-53279483IPR002913START domain
PfamPF018522.6E-51280483IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-5382477IPR023393START-like domain
SuperFamilySSF559616.87E-25502735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MDMFQPNMNM EGHNQLHHML DMTQNTSESD IARIRDDDFD SATKSGSDNH EGASGDDQDQ  60
RPKKKRYHRH TQHQIQEMES FFKECPHPDD KQRKELSREL GLEPLQIKFW FQNKRTQMKL  120
FAHSLISLSQ TQHERHENTH LRTDNEKLRA DNMRYRDALS NSSCPNCGGP TAIGEMSFDE  180
HHLRLENARL REEIDGHIRL LFPFDFQIDR ISAIAAKYVG KPVVNYPLLS PPVPPPRPLE  240
LGVGNFGGQP GIGGEMYGAG DLLRSISAPT EADKPMIIEL AVAAMEELVK MAQMGEPLWM  300
TNQLDGTSTL HEDEYFRTFP RGIGPRPTGF KCEASRETAV VIMNHINLVE LVMDVDQWST  360
VFSGIVSRAM TLEMTAEFQV PSPLVPTRES YYVRYCKQLS DGTWAVVDVS LDSLRPSPAV  420
RCRRRPSGCL IQEMPNGYSK VTWVEHVEVD DRGVHNLYRQ LVSSGHAFGA KRWVATLDRQ  480
CERLASAMAT NIPSGDVGVI TNQEGRKSML KLAERMVISF CAGVSASTAH TWTTLSGTGA  540
DDVRVMTRKS IDDPGRPPGI VLSAATSFWL PVSPKRVFDF LRDENYRNEW DILSNGGVVQ  600
EMAHIANGRD TGNCVSLLRV NSANSSQSNM LILQESCNDP TASFVIYAPV DIVAMNLVLN  660
GGDPDYVALL PSGFAILPDG TSDLGGGAIG EADSGGSLLT VAFQILVDSV PTAKLSLGSV  720
ATVNNLIACT VERIKASLSP ENA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817594.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_018817595.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2I4EDW60.0A0A2I4EDW6_JUGRE; homeobox-leucine zipper protein HDG2-like isoform X1
STRINGXP_002524172.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2