PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029239-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 842aa    MW: 92499.8 Da    PI: 4.5775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029239-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00036336701355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R++i +++ eLr ++P+      +K s  + L ++++Y+  Lq
  WALNUT_00029239-RA 633 RQQIQDRIKELRGIIPHG-----GKCSIDSLLDRTIKYMLFLQ 670
                         89***************8.....7999999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-81049IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.1E-1356151IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.696620669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-4633674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-5633675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MGEAETGSAL KKTLKFLCCS DGWSYGVFWR LAQRDSLLLT FEDAYYQEQE GAMVDMLPQV  60
HMMGEGVIGQ AAFTGKHRWM FADVLGEDWD SIGSFESQDI FQDGFEFRYQ FSSGIKTIAV  120
ISVAPQGVVL FGSTQKILER SEFLDQTKRL FQELTNVEES IPLEKALSSL NSDAYVLNGL  180
FDSSISSGNS RNGDLNAICY DSRKEVLGES YSATILNESS HTMLEIHDAR MAPLLGDWDH  240
PDNRLLTGGT ETQILLSDKL STQLQQVFVQ STSPTSTGST EDFMLTSFDP LLASQSRVQD  300
SSNLFTSKAS SLDSCRNTVI NVQGDDLSQH FCPSTLVKEG KLPETATSVH NFSEFKPDDF  360
TTEVSKLCLV DDLSQWFSPP PAHGFNRVAT ALGNDYSQPI GVTSASSFLV GGDVFNRFTS  420
KSPGNSVQSS NPNTFNSDGK EDSAIMHGAE NCLFDNLGLD FGYDQSGEDL IMPVMSAAND  480
TCLSECVSEL DVSSMAGPRK GLFSELGLQE LLDGISNSKS FAKSSFEEKI PTTKRARVDS  540
SSVNSNQLQL ASLACSNGSM NTMQPGYNLE KKNNVPKKEV LSKSQVGLWI DDSYSVNVGN  600
TGLARPQKPE EPAKATRKRA RPGESTRPRP KDRQQIQDRI KELRGIIPHG GKCSIDSLLD  660
RTIKYMLFLQ GMTKYADRLK QSDEPKLIGQ ENGVVLRDNS MGGGSGGSTW AFEVGSQTMV  720
CPIIVEDHPP GQMLIEMLCE EQGYFLEIAD IIRGFQLNIL KGVMETRDDK IWARFIVEAS  780
SHVTRIDIFL SLVQLLKQMT TSSKDTAYES NNAIDGVGIS LLDSNQQQNL LHPISLAETL  840
GC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858098.10.0PREDICTED: transcription factor bHLH157-like isoform X2
TrEMBLA0A2I4HPM10.0A0A2I4HPM1_JUGRE; transcription factor bHLH157-like isoform X2
STRINGXP_008239218.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-51conserved peptide upstream open reading frame 7