PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029027-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 370aa    MW: 41050.2 Da    PI: 7.3897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029027-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.3e-183481148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l+ +++q+G g+W+  +r+ g+ R++k+c++rw++yl
  WALNUT_00029027-RA 34 RGPWTPEEDQKLLAYIQQYGCGSWRCLPRKAGLQRCGKSCRLRWNNYL 81
                        89*********************************************7 PP
2Myb_DNA-binding45.71.5e-1487132148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++  Ed  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  WALNUT_00029027-RA  87 RGQFSLLEDRTIIQLHALLGSR-WSAIATHLP-KRTDNEIKNYWNTHL 132
                         7899999***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575116No hitNo description
Gene3DG3DSA:1.10.10.601.0E-232584IPR009057Homeodomain-like
PROSITE profilePS5129415.1582981IPR017930Myb domain
SuperFamilySSF466892.16E-2932128IPR009057Homeodomain-like
SMARTSM007171.5E-113383IPR001005SANT/Myb domain
PfamPF002491.1E-153481IPR001005SANT/Myb domain
CDDcd001678.35E-113681No hitNo description
PROSITE profilePS5129423.16382136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2485136IPR009057Homeodomain-like
SMARTSM007173.1E-1486134IPR001005SANT/Myb domain
PfamPF002496.5E-1487132IPR001005SANT/Myb domain
CDDcd001672.17E-1090132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAERASIFQA VFSSACFNTR MGRTPCCNAD GMNRGPWTPE EDQKLLAYIQ QYGCGSWRCL  60
PRKAGLQRCG KSCRLRWNNY LRPDIKRGQF SLLEDRTIIQ LHALLGSRWS AIATHLPKRT  120
DNEIKNYWNT HLKKRLAMMG IDPVTHKPKG TVLESANGDP KSASNLSHMA QWENTRLEAE  180
ERLVRESQLC YQLYDLPPGF SSGRSSAAAS GMLLNETTTS KLAPPRCLDV LKVWESVMLE  240
SMLAAGIDHH GGVDSGSVFG LGMGGNSDIA SEVSALGFLE INARDHQTYL NEFNEISTMQ  300
LHKMNLATGD VGDRQHHHDH DGVFNNLGNH ILSANSLITG SAGSGSSNAV EERARDEKNY  360
WHDIINTGSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28341367108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806265.10.0PREDICTED: myb-related protein 330-like
TrEMBLA0A2I4DGJ30.0A0A2I4DGJ3_JUGRE; myb-related protein 330-like
STRINGXP_010093592.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.28e-93myb domain protein 16