PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028885-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 184aa    MW: 20888.8 Da    PI: 9.2003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028885-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.3e-10551346
                        SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                         WT+   +l+ +a +++G++    +W+  ar +g g+t +++k ++  
  WALNUT_00028885-RA  5 TWTAKQNKLFENALAMYGKDtgpdRWHNLARAVG-GKTVEEVKRHYEV 51
                        7*********************************.**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.057157IPR017884SANT domain
SMARTSM007175.1E-7255IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-7459IPR009057Homeodomain-like
CDDcd001677.38E-8553No hitNo description
PfamPF002495.1E-7550IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-12660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGGSTWTAKQ NKLFENALAM YGKDTGPDRW HNLARAVGGK TVEEVKRHYE VLVEDVRQIE  60
TGQTFSSDLL LPPILMDSTI STRRQCSIER DDGLASLANM AIDFFGFSQH RQPLLSRSLC  120
YNALCNGNTR SSFINVLVLS PRSRRFYDAR LEMHQPLEAC FLYKKPLGIS DRNVHFGRNG  180
PKYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-22363867RADIALIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-28RAD-like 6