PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00028669-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WOX

Protein Properties

Length: 275aa MW: 31410.8 Da PI: 5.8826

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028669-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	116	176	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ + +ps+++++e++++l +++e++V++WFqNrRa+ k+ WALNUT_00028669-RA 116 RQRWTPTPVQLQILERIFEQgTGTPSKHKIKEITSELgqhgQISETNVYNWFQNRRARSKR 176 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	7.1e-33	115	178	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq WALNUT_00028669-RA 115 SRQRWTPTPVQLQILERIFEQGTGTPSKHKIKEITSELGQHGQISETNVYNWFQNRRARSKRKQ 178 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-18	111	181	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.852	112	177	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-19	114	180	IPR009057	Homeodomain-like
SMART	SM00389	5.4E-16	114	181	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-19	116	176	IPR001356	Homeobox domain
CDD	cd00086	3.32E-14	116	178	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MTEFSLMDWE KQGNNDHHHH HHHQQDQREE QVQNGSVGNI EVNENGNNGG MLYVKVMTDD 60 QLEILRKQIA VYATICEQLV EMHKNLTAQQ DLAGVRLGNL YCDPLMTSAV HKITSRQRWT 120 PTPVQLQILE RIFEQGTGTP SKHKIKEITS ELGQHGQISE TNVYNWFQNR RARSKRKQQN 180 AAPNTADSEV ETEVDSPKDK KTKPEDFHSQ QNSGPRAEDL CFQNPEISSD LHFLDPQSSK 240 EETMFPSDGS IKIARGLDQI SFYDGLQSNP SMYVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	177	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018857699.1	0.0	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	2e-86	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A2I4HNG1	0.0	A0A2I4HNG1_JUGRE; WUSCHEL-related homeobox 13
STRING	XP_008241933.1	1e-131	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-87	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]