PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00028605-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18134.5 Da PI: 6.087 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.2e-39 | 2 | 96 | 4 | 98 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCk+l+r+C+++C++apyf++++p+kfanvhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i+ lq+++ +l+++la WALNUT_00028605-RA 2 ACKLLKRRCTPKCIFAPYFCSDEPSKFANVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAITLLQRKMVELQHDLAI 94 9******************************************************************************************98 PP DUF260 97 lk 98 ++ WALNUT_00028605-RA 95 AR 96 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.603 | 1 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.0E-39 | 2 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MACKLLKRRC TPKCIFAPYF CSDEPSKFAN VHKVFGASNV SKILTEVPEE QREDTVNSLA 60 YEAEARLRDP VYGCIGAITL LQRKMVELQH DLAIARACLA RYAASSSSSA SSCSSSLVWD 120 DHVIMPPYPD VPACNDPNYS FSQNSSDLTQ YGPVNDFSHS PYVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-45 | 2 | 103 | 14 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-45 | 2 | 103 | 14 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018851818.1 | 1e-118 | PREDICTED: LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 7e-53 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A2I4H6P3 | 1e-117 | A0A2I4H6P3_JUGRE; LOB domain-containing protein 21-like | ||||
STRING | XP_010067552.1 | 1e-76 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-51 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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