PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00028539-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 312aa MW: 33788.3 Da PI: 7.1336

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028539-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.1e-33	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl WALNUT_00028539-RA 40 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.468	37	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-32	37	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	40	95	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.76E-16	40	96	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-7	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-15	137	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MYPRMIQSHL EGGLVAQEDI PIQGGGGRGD PCLVLTSDPK PRLRWTADLH ERFVDAVTQL 60 GGASKATPKA IMRTMNVKGL TLFHLKSHLQ KYRLGKQSGK DMGEASIDGM SASCLLESPS 120 TGKSSPNLPT SDHDGYEVNE ALRAHMEVQS KLHLQVEAEK HLQIRQDAER RYMAMLETAC 180 KMLADQFIGG AVINTEGQKC QGFVNKTPRS SSLDHLGFYS LQSPRVAGVH GLEEEVPPSL 240 HPQRTDCSTE SCLTSHESPG GLTLEGSPGG GQKRMLGLDS TTASLIWGEG KMKSQDINVA 300 QVNPRSITGY GI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018805348.1	0.0	PREDICTED: protein PHR1-LIKE 2-like isoform X1
Refseq	XP_018805349.1	0.0	PREDICTED: protein PHR1-LIKE 2-like isoform X1
TrEMBL	A0A2I4DDX5	0.0	A0A2I4DDX5_JUGRE; protein PHR1-LIKE 2-like isoform X1
STRING	XP_008224659.1	1e-169	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-64	G2-like family protein