PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028463-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 370aa    MW: 41861.7 Da    PI: 5.4469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028463-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  WALNUT_00028463-RA 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding44.82.9e-1467110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +++ E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00028463-RA  67 RGMFSQKEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                         7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.171965IPR017930Myb domain
SuperFamilySSF466899.73E-2912108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001671.07E-101761No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.41466116IPR017930Myb domain
SMARTSM007176.9E-1366114IPR001005SANT/Myb domain
PfamPF002492.6E-1367111IPR001005SANT/Myb domain
CDDcd001671.03E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQKEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKLLS EIEPKDEKKC TEMASLHIPE SQEFPTISSA LASQGPTFLV EDMNYYDGEV  180
TDASRELLMY KPAFDPMAYF EFQAGSVESN GYNSSFLLQN QTTIKTPNDQ SHFQTNSNYG  240
FASMPSLTNS DHGNLSGTEF SDNSASRMSS FFLNEVKESS SNSSNMSSYA GFQMNNMVEN  300
AAFSWDADNK LESLFQFQVN GIKSDEPKPS SWQHEQGQLH ARSSVDFSSY PLTSLSEDLT  360
GANFDVFQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707851e-115AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805469.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A2I4DE940.0A0A2I4DE94_JUGRE; transcription factor MYB86-like
STRINGEOY208350.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.36e-84myb domain protein 55