PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028382-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 431aa    MW: 49147 Da    PI: 5.0466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028382-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.84.9e-13155195848
                         HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         E  ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  WALNUT_00028382-RA 155 EIGLLIQLVQQYGVRKWSHIAQMLPAGRIGKQCRERWHNHL 195
                         5568***********************************97 PP
2Myb_DNA-binding53.65.2e-17201243145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ W++eEd+ l++a+ + G++ W+ Ia++++ gRt++++k++w+
  WALNUT_00028382-RA 201 KDTWSEEEDKVLIQAHGEVGNK-WAEIAKRLP-GRTENSIKNHWN 243
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-9147197IPR001005SANT/Myb domain
PROSITE profilePS512949.321153195IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-23155203IPR009057Homeodomain-like
PfamPF002499.8E-12155195IPR001005SANT/Myb domain
CDDcd001673.78E-10158195No hitNo description
SuperFamilySSF466892.18E-26174254IPR009057Homeodomain-like
PROSITE profilePS5129425.995196250IPR017930Myb domain
SMARTSM007171.2E-16200248IPR001005SANT/Myb domain
PfamPF002499.4E-16201243IPR001005SANT/Myb domain
CDDcd001674.09E-13203246No hitNo description
Gene3DG3DSA:1.10.10.608.2E-22204248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MELQTKLMEN LGSQPMLFSP TYSLKPYMKD EFSFGTPSSK CLLQDFHHPD HEFHANGFAS  60
NPIFGVQTHG CHDSLDNFTY GFSTECKPFA ENGGHGHVMD NFQSGGRYLS FPQTNPADIV  120
ATDDHQGPMA FTTTFQDVKP VNFIVPDEVS CITSEIGLLI QLVQQYGVRK WSHIAQMLPA  180
GRIGKQCRER WHNHLRPDIK KDTWSEEEDK VLIQAHGEVG NKWAEIAKRL PGRTENSIKN  240
HWNATKRRQF SKRKCRSKYP RSSLLQEYIK SLNLDSNTVQ NETKTNASND GGTTIHDNTQ  300
LKLKALTQPK IITSTEFYPD NSEYYDFHEV LDFCFDGNLS RESCSIGSLL GDYMHCTLTV  360
DKKDLDEESW PNSALDHVVD DHEENVVCDP VVDEKDFEMD VPVLDMNPEV ECESKKELDL  420
VEMISQIIEI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-4015924915104C-Myb DNA-Binding Domain
1msf_C2e-4015924915104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807614.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L25e-72MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2I4DKD30.0A0A2I4DKD3_JUGRE; transcription factor MYB98-like
STRINGcassava4.1_023016m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-74myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]