PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028370-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 317aa    MW: 35803.1 Da    PI: 10.0086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028370-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-082872345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        +WT+ E + + +a + + ++   +W ++a++++ g+t +++   + 
  WALNUT_00028370-RA 28 KWTAAENKMFENALAVYDKEspdRWQKVAAMIP-GKTVNDVMRQYK 72
                        8******************9*************.*******98886 PP
2Myb_DNA-binding46.96.3e-15135179347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  WALNUT_00028370-RA 135 PWTEEEHKLFLMGLKKHGKGDWRNISRNFVITRTPTQVASHAQKY 179
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-42373IPR009057Homeodomain-like
PROSITE profilePS512937.8632479IPR017884SANT domain
SuperFamilySSF466891.35E-102474IPR009057Homeodomain-like
SMARTSM007171.7E-82577IPR001005SANT/Myb domain
CDDcd001671.40E-72874No hitNo description
PfamPF002491.6E-62873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12127180IPR009057Homeodomain-like
PROSITE profilePS5129420.847128184IPR017930Myb domain
SuperFamilySSF466895.38E-17129184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-16131183IPR006447Myb domain, plants
SMARTSM007173.3E-13132182IPR001005SANT/Myb domain
CDDcd001673.79E-11135180No hitNo description
PfamPF002492.5E-13135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKWETEIISP ASYIPNANWF LEESKSAKWT AAENKMFENA LAVYDKESPD RWQKVAAMIP  60
GKTVNDVMRQ YKELEVDVGK IEAGLVPVPG YSTSPFTLDW ANSHGYDGFR QSYGIGGKRS  120
SSTRPAEQER KKGVPWTEEE HKLFLMGLKK HGKGDWRNIS RNFVITRTPT QVASHAQKYF  180
IRQQLSGGKD KRRASIHDIT TVNLADIKMP SPEDKAPSSP EHSSVLQHQQ QQQQQQQRNS  240
TVTARTPPFH WNQPNGGGAT MSFSPTQENL FMASPYGIVG SNYGHKMQGQ NLPRGVSHES  300
YTGQAQNMVF QMRYPRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1629941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810775.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-134DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2I4DUF30.0A0A2I4DUF3_JUGRE; transcription factor DIVARICATA-like
STRINGEOY338011e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-104Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]