PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028291-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 378aa    MW: 43308.7 Da    PI: 6.3252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028291-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.56.1e-5461331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yLk+kve+ ++el evi+ vd+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratksgyWkatgkd
  WALNUT_00028291-RA   6 LPPGFRFHPTDEELVGYYLKRKVERLEIEL-EVIPVVDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKSGYWKATGKD 95 
                         79****************************.99**************95344555788********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v++ +++++g +ktLvfy+grap g +tdWvmheyrl
  WALNUT_00028291-RA  96 RKVVC-QSSVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                         *****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-584143IPR003441NAC domain
PROSITE profilePS5100555.0846199IPR003441NAC domain
PfamPF023651.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAGASLPPGF RFHPTDEELV GYYLKRKVER LEIELEVIPV VDLYKFDPWE LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATKSGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDLSQG SPSFQVNSRV SYNALALHLP LKFVWKALVL GFPSKVWETD  180
TVFGYSPKGA FALCRVVKKN EHIQKIKDAG EPKAERVRRS LSNADFMSTR TPNEAMSIPN  240
NESQYSSPST SPYEVTPTAE FEPALMETNP TSFWVSPDLI LDSSKDYSQV QEAVSEYFPQ  300
YQFPSLETPW PTFEHAEISS ISSHSNFTGE IEARDDLSRI GCLSPYSGHT NYMGLFGSED  360
VPYEGYDQTS SLRYPHPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49213311140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806244.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotO496971e-103NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A2I4DGG80.0A0A2I4DGG8_JUGRE; NAC domain-containing protein 86-like
STRINGcassava4.1_011029m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-105NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]