PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00028165-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28821.4 Da PI: 6.9446 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.5e-18 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+ +v+ +G+++W++I++ ++ gR++k+c++rw + WALNUT_00028165-RA 16 KGSWSPQEDATLISLVENHGPRNWSLISQGIP-GRSGKSCRLRWCNQ 61 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 70 | 112 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++ a+ +G++ W+tIar ++ gRt++ +k++w++ WALNUT_00028165-RA 70 PFTPAEDAIIYTAHSIHGNR-WATIARLLP-GRTDNAIKNHWNST 112 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.554 | 11 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-29 | 14 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-18 | 16 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.51E-14 | 18 | 60 | No hit | No description |
SMART | SM00717 | 1.7E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.625 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 70 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-11 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MKMTSLQKIG GDHRLKGSWS PQEDATLISL VENHGPRNWS LISQGIPGRS GKSCRLRWCN 60 QLSPEVQHRP FTPAEDAIIY TAHSIHGNRW ATIARLLPGR TDNAIKNHWN STLRRRRDSS 120 SESNSGAKRL GGPDAAISPT ASVEWDSGVS KRQCLSAPPE HTGPDEEEDL AGLEDTSLTL 180 SLSLTAGKKM KEKEEEVVKV EEVARIVRNE EEEEGTCLVT IMQRMVAAEV RSYIDHLRAE 240 NGLGPPCLPA QKDPYEIRKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-39 | 15 | 116 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-39 | 7 | 116 | 49 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-39 | 7 | 116 | 49 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-39 | 15 | 116 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-39 | 15 | 116 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846327.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-50 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2I4GR17 | 0.0 | A0A2I4GR17_JUGRE; transcription factor MYB44-like | ||||
STRING | VIT_13s0067g01360.t01 | 1e-83 | (Vitis vinifera) | ||||
STRING | cassava4.1_022961m | 2e-83 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 4e-49 | myb domain protein 70 |
Publications ? help Back to Top | |||
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