PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028164-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 267aa    MW: 29609.2 Da    PI: 8.6412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028164-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-1375121354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+++E+rRRdriN  ++ Lr+l+Pk+      K++Ka+ L  +++++k+L
  WALNUT_00028164-RA  75 KSHSQAEKRRRDRINAQLSILRKLIPKS-----DKMDKAALLGSVIDHVKDL 121
                         79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.17372121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1175121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1475124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-1175123No hitNo description
SuperFamilySSF474596.67E-1376127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1178127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-4167211No hitNo description
CDDcd048733.10E-6168204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MENCCYSDGA NWVQCHHAAL NGEYFPYPVP WPLAVPVPPR EVMSTSTRSF QFHGFPPLEG  60
VAEDGGGTAT ATASKSHSQA EKRRRDRINA QLSILRKLIP KSDKMDKAAL LGSVIDHVKD  120
LKRRAMEVSK ACSLPTEVDE VIIDYDHGQD VNMISNVDKR EENILIRVSF CCDDRPELFS  180
ELIQVLKGLR LTVVKADIAS VGGRIKSVLV LCTKALESDQ VGVCLMSTLK QSLKLVLSKI  240
ASSSSMATNC RIRSKRQRFF LPSPYSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846326.10.0PREDICTED: transcription factor bHLH51-like
TrEMBLA0A2I4GR000.0A0A2I4GR00_JUGRE; transcription factor bHLH51-like
STRINGEMJ200251e-100(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-49bHLH family protein