PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028104-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 854aa    MW: 93707.1 Da    PI: 5.0527
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028104-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.1e-105784127
                        --S---SGGGGTS.--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                        +kt+lC++f+r+   C++Gd+C++aHg+
  WALNUT_00028104-RA 57 WKTSLCSYFRRNSgSCSHGDSCRYAHGE 84
                        8**********989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-145390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-75489IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-65684IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.8735685IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-75784IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3303.3E-4184226IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168746.541298854IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.76E-46300326IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.76E-46358461IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.76E-46528651IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.2E-62549651IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138474.4E-9595653IPR025714Methyltransferase domain
CDDcd024402.03E-6597651No hitNo description
Gene3DG3DSA:3.40.50.1505.2E-62738793IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.76E-46741793IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.5E-6742789IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300749781IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1505.2E-62829854IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.76E-46838854IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MNGEDSVPEP SQPPQQDLDQ DHSNSQSASA DDTVSVGEKR KREDPPPSDQ SSLHPLWKTS  60
LCSYFRRNSG SCSHGDSCRY AHGEEELRPR PDNTWDPTSE RAKKALRSEE SERQERPEED  120
VMMTEAVVDE DDDDKDDDDK DNDGCLDSEL RKCLVHLPRK WHSENLMKFL GEEASGFFDW  180
LGVPFKSVKK KKGMTVGFVS FESAVQLKTA QEELKGKSIG NKNLKVADII PRSFEKKIRS  240
AAALPIRDQQ TREPALDGDN VGVPISSNGI EDGDTNNDDK NCSTVDGSVS RARRARDVVT  300
PLAHMSYVDQ LEHKRNSLMQ ILKRLTRNAR KACPNGVSLP EWILKSREIG GLPCELEGII  360
ESPLVNGYRN KCEFSAGYSL QGKPTVGFML GNFREGVTAV EEPVDCPNVS RIACKYASIF  420
QEFLQNSGLP IWNRFNNTGF WRQLTVREGR APGKVDVENS DASISEVILV VQVCSVGFDD  480
AVITGEFKRL AEAFTEGAAE NSPSLPLTAL VVQDHQGISN VAPTDAPLRQ LPIPKAAGPE  540
PDATADPVEA RIHDSIGDLH FCISPTAFFQ VNTLAAEKLY SLAGDWAGLG PDTLLFDVCC  600
GTGTIGLTLA HRVGMVIGIE MNASAVSDAY RNAEINGIKN CKFVCAKAED VMGSLLKEYL  660
NLPQKSDEIS NTSESSDKEI ATPVEKDTSI DNVLEPEENS SHDHVNNKSA SDCLENGGQE  720
TGIQQQGNGT SECGNTSVPQ FKNVVAIVDP PRVGLHPIVI KALRTHPRLH RLVYISCNPE  780
SLVANAIELC TPSPQKIEKG NKNNRGWRGM SSAGLARHRA KSMPISEPFR PVKAMAVDLF  840
PHTVHCEMVM LLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5xj2_A6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5xj2_B6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5xj2_C6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5xj2_D6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5zq0_A6e-17561658275372Uncharacterized RNA methyltransferase SP_1029
5zq1_A6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5zq8_A6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5zq8_B6e-17561658274371Uncharacterized RNA methyltransferase SP_1029
5zth_A6e-17561658275372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018854542.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
RefseqXP_018857258.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2I4HEM60.0A0A2I4HEM6_JUGRE; zinc finger CCCH domain-containing protein 24-like
STRINGcassava4.1_001501m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]