PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028022-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 277aa    MW: 30619 Da    PI: 5.0013
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028022-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1192.6e-37101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+e+++++sw e+g++fvv+++ +fak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+ke
  WALNUT_00028022-RA  10 FLTKTYQLVDDPETDDVVSWGESGTTFVVWKTADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKE 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  WALNUT_00028022-RA  92 LLSQIRRRKT 101
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-62699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-39799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-35799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.0E-331099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAQRCVPAPF LTKTYQLVDD PETDDVVSWG ESGTTFVVWK TADFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLSQIRRRK TVNSAPSLDP AGVKSTGDGP  120
SSASNSGEDL GSSSTSSPDS KNPGSLETTT TAQVTDLSGE NEKLRKDNEI LSSELALMKQ  180
QCEELVAFLT GYLKVGPDQI NGIMRQGISG SSRNGLVDGI NGVDSDEEDD DENNRIEQKE  240
ESLKLFGVWL KGNGKKRGRD EKIGFGRSEA KEMKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-29610126131Heat shock factor protein 1
5d5v_B9e-29610126131Heat shock factor protein 1
5d5v_D9e-29610126131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811267.10.0PREDICTED: heat shock factor protein HSF24-like
SwissprotP223351e-108HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2I4DVU50.0A0A2I4DVU5_JUGRE; heat shock factor protein HSF24-like
STRINGVIT_07s0031g00670.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.17e-80heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]