PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027965-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 254aa    MW: 27371.5 Da    PI: 6.9938
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027965-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15216249132
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                         C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ 
  WALNUT_00027965-RA 216 CTHCGISSksTPMMRRGPAGPRSLCNACGLFWAN 249
                         *****99999**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.1E-1181116IPR010399Tify domain
PROSITE profilePS5132015.35481116IPR010399Tify domain
PfamPF062001.8E-1384115IPR010399Tify domain
PROSITE profilePS5101712.65148190IPR010402CCT domain
PfamPF062033.5E-16148190IPR010402CCT domain
SuperFamilySSF577161.14E-9209249No hitNo description
SMARTSM004013.7E-7210254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-13215249IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.12E-12215250No hitNo description
PfamPF003202.6E-13216249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440216243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MYGHSQTLNM PNQISAAAED DDVSGAGAGA ESIDNSLIRY EAHSIDDAAG SVGGVVDDVT  60
ADAVYSHGGS DGGASEMVIQ RHDGTSQLTL SFRGQVYVFD SVTPDKVQAV LLLLGGCELS  120
SGPQAEMLPQ NQRGGVMEYP VKCSQPQRAA SLNRFRQKRK ERCFDKKVRY SVRQEVALRM  180
QRNKGQFTSS KKSEGAYNWG ALQESGQDDN PQEASCTHCG ISSKSTPMMR RGPAGPRSLC  240
NACGLFWANR VSII
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817541.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH69e-82GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2I4EDS50.0A0A2I4EDS5_JUGRE; GATA transcription factor 25-like
STRINGcassava4.1_024131m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-75GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]