PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027900-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 517aa    MW: 56849.9 Da    PI: 5.3532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027900-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-163178148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed +lv++vk++G g+W+++ +  g+ R++k+c++rw ++l
  WALNUT_00027900-RA 31 KGPWTAVEDAILVEYVKKYGEGNWNAVQKNCGLMRCGKSCRLRWANHL 78
                        79******************************************9986 PP
2Myb_DNA-binding49.41.1e-1584127146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
  WALNUT_00027900-RA  84 KGSFSPEEERIIIELHARLGNK-WARMASQLP-GRTDNEIKNYWNT 127
                         799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3422678IPR017930Myb domain
SuperFamilySSF466893.11E-3028125IPR009057Homeodomain-like
SMARTSM007172.6E-133080IPR001005SANT/Myb domain
PfamPF002491.0E-143178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-233285IPR009057Homeodomain-like
CDDcd001672.57E-113378No hitNo description
PROSITE profilePS5129425.24479133IPR017930Myb domain
SMARTSM007177.8E-1683131IPR001005SANT/Myb domain
PfamPF002491.0E-1484127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2586133IPR009057Homeodomain-like
CDDcd001672.89E-1186127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MITKSQEGAQ SEAATGPAKG GSESSRAGLK KGPWTAVEDA ILVEYVKKYG EGNWNAVQKN  60
CGLMRCGKSC RLRWANHLRP NLKKGSFSPE EERIIIELHA RLGNKWARMA SQLPGRTDNE  120
IKNYWNTRMK RRLRSGLPIY PQEVQQEAAA FHLLKQQQQQ QQEHLHQKHQ DHSSAGSFSA  180
LLSSSQPLEL NYNPSISIFE TMNFSSAANH LPNQASYDSY SKPSNQFRFF SENNNIAGYT  240
LPLSPISPFE SSPSTVFNQN ISSKPISSPL IEFSSDSLSR SYNVGGMAAR APYEPFGVAQ  300
DLETEPPSNQ TPPQSTTHAS STASGDENFM RAPSNANDCE LETPLSQDDS GLLNALLVES  360
RTLSQKSKGK ALSAASSDKG KSVVVDALSK EEDTIHMEST MKISGETSAE NQWDDLSSSQ  420
SSLGMKPTDQ DQLVEMNSMD DDLLSLLDNF PSAMPAPEWY RGGLDISNGK SSGVERDNMR  480
LDTQQNALPA PVTTSTTTPE HEWGIGPYQW NNMPSIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32291335108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808993.10.0PREDICTED: pre-mRNA-splicing factor CEF1
TrEMBLA0A2I4DPC10.0A0A2I4DPC1_JUGRE; pre-mRNA-splicing factor CEF1
STRINGEOY022061e-135(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-73myb domain protein 101