PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027752-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HB-PHD
Protein Properties Length: 1164aa    MW: 127433 Da    PI: 5.0202
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027752-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox376e-12100310451052
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52  
                            +++L ++F++n+yp + ++e LA++lg+t +qV+ WF N R
  WALNUT_00027752-RA 1003 AVTQRLYKVFKENQYPERVTKESLAQELGITFQQVSKWFENAR 1045
                          56899************************************99 PP
2PHD39.71.1e-13637692151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ Cg+    ++++++lCdg C++ fH++Cl+++l se++p +   wlC+ C++k
  WALNUT_00027752-RA 637 FCAKCGSkdLSADNDIILCDGaCDRGFHQYCLEPPLLSEDIPPDekGWLCPGCDCK 692
                         699***977677********66******************999889*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.44E-13627695IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.7E-13631692IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.136635692IPR019787Zinc finger, PHD-finger
PfamPF006283.0E-11637692IPR019787Zinc finger, PHD-finger
CDDcd155044.42E-28637689No hitNo description
SMARTSM002492.2E-9637690IPR001965Zinc finger, PHD-type
PROSITE patternPS013590638689IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003896.3E-109891055IPR001356Homeobox domain
PROSITE profilePS5007112.0669911051IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-129971045IPR009057Homeodomain-like
SuperFamilySSF466897.27E-129981051IPR009057Homeodomain-like
CDDcd000862.09E-109981045No hitNo description
PfamPF000461.6E-910031045IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1164 aa     Download sequence    Send to blast
MDASSAPVSS QTRKSTCPEQ NESGQMDGSL FSGPSERRLQ LGSEISQNEQ VEISFPQNVA  60
KSSLTEQLGP PPVSNSFQAG KSSYSQKNMD SVCESKLGSL CSELSDQENH VVSELLQSEP  120
EETSSALPTG ADNKILQSSS ENATSGSLTV PLQLHSQVVA ESSETGRSLC PHQTTLQNES  180
DAGGLCGKPL KEKDMPESEP KEKDMPESEL EHTKTENTSP TVSSYVANEP LHSSESVHST  240
LENESNSGGL CGKPLKEQDK PESELVHTST VQTSPAVLSY VADEQLQSTE SLGLPSDNVN  300
KSNQIGKISP PQQTTHEEFG FTSDLLDMKC QIGSDLAQNE PVGTITAASN LNKSSVTEHL  360
ELLTEDVSRS SQTEKHSYPQ QTISEQTHEF GSGISEQCYH LDSELVQNVP AETSSILPSC  420
IVKNGSATEH IGLAPKGTSN NLGSEKLGPP TEDMSTNFTL EQLERPAKHA FKKSRRLGRR  480
DNRTPKSLRK KYMLRSLAAS DRVLRSRTHG MPKATGSSSN LANVSTMEEK QRKSKKGRGK  540
RIVADEFSRI RTHLRYLLNR ISYEQNLIDA YSSEGWKGGS LEKLKPEKEL QRATSEILRR  600
KLKIRDLFQH LGSLCTEGRL PGSLFDSEGE ICSEDIFCAK CGSKDLSADN DIILCDGACD  660
RGFHQYCLEP PLLSEDIPPD EKGWLCPGCD CKVDCIDLLN ETQGTDLSLA DSWEKVFPEA  720
AATAGHNPDH NFSLPSDDSD DNDYNPDGQD DEKVLGDESS SDESEYASAT EELETPPNDD  780
QYLGLPSDDS EDDDYNPDAA DHSEKVKQES SSSDFTSDSE DLAAALDDNR SSRDDEDPMS  840
ASLDGVKPFG SSGGERPKPG GKKQSLNDEL LSILESDPGQ AGFPTVSGKR HMERLDYKKL  900
HDETYGNVST DSSDDEDYNG AAAPRKRKKT TREVAPLSPS GKNMRDINQN RKVADHTPKR  960
RTRQNANIDG TSNSPTKTLD GYHRSGSGGK RIRSSTSRRL GEAVTQRLYK VFKENQYPER  1020
VTKESLAQEL GITFQQVSKW FENARWSFHH SSHMEAGGAD SASKAGTPSS QTNMATRDTT  1080
CNGAQCEASP RSATTVRESS GDLRHSELET RESCRHKSTT PNSRKRKGRS DPQASDPNFR  1140
IEEFKKANKV QAGGGMKTRR RKSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1924928RKRKK
211571162TRRRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018809403.10.0PREDICTED: homeobox protein HAT3.1
TrEMBLA0A2I4DQI30.0A0A2I4DQI3_JUGRE; homeobox protein HAT3.1
STRINGXP_010099058.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-97Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain