PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027679-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 296aa    MW: 33367.3 Da    PI: 9.7742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027679-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-162168148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l++ ++++G g+W+t ++  g+ R++k+c++rw +yl
  WALNUT_00027679-RA 21 KGAWTKEEDHRLINHIRLHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 68
                        79******************************99************97 PP

2Myb_DNA-binding59.47.9e-1974118147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  WALNUT_00027679-RA  74 RGNFTAEEDELIIKLHSMLGNK-WSLIAGKLP-GRTDNEIKNYWNTH 118
                         89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-231271IPR009057Homeodomain-like
PROSITE profilePS5129415.3061668IPR017930Myb domain
SuperFamilySSF466892.75E-2919115IPR009057Homeodomain-like
SMARTSM007178.3E-122070IPR001005SANT/Myb domain
PfamPF002491.3E-142168IPR001005SANT/Myb domain
CDDcd001672.20E-92368No hitNo description
PROSITE profilePS5129428.88269123IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2872124IPR009057Homeodomain-like
SMARTSM007171.1E-1773121IPR001005SANT/Myb domain
PfamPF002491.0E-1674118IPR001005SANT/Myb domain
CDDcd001671.33E-1276119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGKLWKRMGR SPCCEKAQMN KGAWTKEEDH RLINHIRLHG EGCWRTLPKA AGLLRCGKSC  60
RLRWINYLRP DLKRGNFTAE EDELIIKLHS MLGNKWSLIA GKLPGRTDNE IKNYWNTHIK  120
RKLISRGIDP QTTARAPSHL NLRNSSPPSL PVAKISLMNQ SNNKDMISSA TTLKPKTESV  180
EDANCSSSGT TTEEEPPRLQ QRQKPESQEV LFESKLNLDL SVGLGPFQAE STPVVFANTA  240
ESKLQKVPYQ LFGRVQSAMV AKAVCLCCHL GFQSSELCRN CQNSNGFYRY HTSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291812324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00053PBMTransfer from AT1G22640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850674.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ9S9K93e-92MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2I4H3H30.0A0A2I4H3H3_JUGRE; transcription repressor MYB6-like
STRINGXP_010104477.11e-127(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-94myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]