PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00027679-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33367.3 Da PI: 9.7742 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++ ++++G g+W+t ++ g+ R++k+c++rw +yl WALNUT_00027679-RA 21 KGAWTKEEDHRLINHIRLHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 68 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 59.4 | 7.9e-19 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ WALNUT_00027679-RA 74 RGNFTAEEDELIIKLHSMLGNK-WSLIAGKLP-GRTDNEIKNYWNTH 118 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 12 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.306 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.75E-29 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-12 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 21 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-9 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 28.882 | 69 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 72 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-17 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 74 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-12 | 76 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGKLWKRMGR SPCCEKAQMN KGAWTKEEDH RLINHIRLHG EGCWRTLPKA AGLLRCGKSC 60 RLRWINYLRP DLKRGNFTAE EDELIIKLHS MLGNKWSLIA GKLPGRTDNE IKNYWNTHIK 120 RKLISRGIDP QTTARAPSHL NLRNSSPPSL PVAKISLMNQ SNNKDMISSA TTLKPKTESV 180 EDANCSSSGT TTEEEPPRLQ QRQKPESQEV LFESKLNLDL SVGLGPFQAE STPVVFANTA 240 ESKLQKVPYQ LFGRVQSAMV AKAVCLCCHL GFQSSELCRN CQNSNGFYRY HTSLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-29 | 18 | 123 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00053 | PBM | Transfer from AT1G22640 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850674.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9S9K9 | 3e-92 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A2I4H3H3 | 0.0 | A0A2I4H3H3_JUGRE; transcription repressor MYB6-like | ||||
STRING | XP_010104477.1 | 1e-127 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-94 | myb domain protein 3 |