PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027623-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 320aa    MW: 36465.9 Da    PI: 5.8004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027623-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed +l + v ++G ++W+ Ia+  g++Rt+k+c++rw +y+
  WALNUT_00027623-RA 10 KGPWTEQEDFKLNCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYM 57
                        79********************************************97 PP
2Myb_DNA-binding52.21.4e-1663108148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  WALNUT_00027623-RA  63 RGKMTPHEERLVLELHDKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.688557IPR017930Myb domain
SuperFamilySSF466892.21E-287104IPR009057Homeodomain-like
SMARTSM007177.1E-13959IPR001005SANT/Myb domain
PfamPF002498.2E-141056IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-181164IPR009057Homeodomain-like
CDDcd001673.94E-91257No hitNo description
PROSITE profilePS5129426.51858112IPR017930Myb domain
SMARTSM007175.3E-1662110IPR001005SANT/Myb domain
PfamPF002491.7E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2365111IPR009057Homeodomain-like
CDDcd001671.82E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKMVQEGIRK GPWTEQEDFK LNCFVGLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYMHPG  60
LKRGKMTPHE ERLVLELHDK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKLAVS  120
PPPSSCTSHL SSASNPAVDS SPFPQTGAES FSEKRGARII ASAEKQKNEE KVGESGYSMD  180
YIWKDEAGEE SFQETGAPKV IAVDCLPFPQ TGAESFYDTG GLPVIAPAEK QNEEKAGENG  240
YSMDDIWKDI ALSEENNIKP ANDSYGEEVR SFSPPPLASP PWEFWLDSLW RFDEEESKMY  300
PPMGDQFFPF YEYGRASLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26101124105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806932.10.0PREDICTED: transcription factor MYB48-like isoform X2
TrEMBLA0A2I4DIG40.0A0A2I4DIG4_JUGRE; transcription factor MYB48-like isoform X2
STRINGXP_008222863.11e-92(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-79myb domain protein 48