PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00027490-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 358aa MW: 40118 Da PI: 6.0683 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.1 | 8.1e-28 | 196 | 246 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r+ W+p+LH++F+eav+qLGG+++AtPk+i+elm+v+gLt+++vkSHLQ WALNUT_00027490-RA 196 KQRRYWSPQLHRCFLEAVQQLGGEQVATPKQIRELMQVDGLTNDEVKSHLQ 246 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.376 | 193 | 253 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.74E-13 | 194 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 195 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 196 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-6 | 199 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MELTLDLSRV FVPKTISELV REISTAGNSS EKLSKLHDCV QRLEDERSKI EGFKRELPLC 60 MNLLNDAIGR LKEAAMHCME SDNDDKKNWM NSAQLWITGP DYDYKKEESA SEAKLHGEED 120 DWSVLENPIQ PQSNRNMGGN FPSLKEENEV SQVTSLSLMT PLPELNPSDS VSKRRTSFGC 180 RGSNSGSSLL TEPPRKQRRY WSPQLHRCFL EAVQQLGGEQ VATPKQIREL MQVDGLTNDE 240 VKSHLQVGIH GLFSQVLSYV IPSSLLFKVI YLDIMPWQKY RLHVQRRASS SSANGLWMAQ 300 DQHRKRSNPN TSQSGSPKGT LLAGVSAKDL FSIGDNSKEA EADEESDGHS CKGGLQEP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018807855.1 | 0.0 | PREDICTED: myb family transcription factor EFM isoform X2 | ||||
Refseq | XP_018843982.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like isoform X2 | ||||
Refseq | XP_018843986.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like isoform X2 | ||||
Refseq | XP_018853099.1 | 0.0 | PREDICTED: myb family transcription factor EFM-like isoform X2 | ||||
TrEMBL | A0A2I4DL33 | 0.0 | A0A2I4DL33_JUGRE; myb family transcription factor EFM isoform X2 | ||||
STRING | EMJ05590 | 1e-97 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-54 | G2-like family protein |