PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00027468-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 310aa MW: 34088.2 Da PI: 8.3466

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00027468-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+++ WALNUT_00027468-RA 34 QQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRAK 94 68999***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.2E-33	36	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	38	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-24	39	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MHQERDGGAP EEIRQQQEDR RLKPIQAENQ QQQQQQPQKC PRCESLNTKF CYYNNYSLSQ 60 PRYFCKACRR YWTQGGTLRN VPVGGGCRKG KRAKTSSSSG AENSRSQQPQ QIQQNLTNRP 120 AIIPSNPVNT TSPILTSTEP AGNLATPSIQ SIAPYYAGGG YLSSLAAIQS LSQSHSFSTQ 180 ALDVGGDLGS SSNLDLLQGF AVPSFGSQQQ QQIQHRQFYQ MSNRDRNVES DLYPTEETLS 240 QSSRPPSSSH DWHQNFLYNT NPVAPDTTLW SISTIASTTA AGYTNSNNNG GSTSNPGQWP 300 HDLPGYGPPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018816400.1	0.0	PREDICTED: dof zinc finger protein DOF1.6-like isoform X1
TrEMBL	A0A2I4EAH7	0.0	A0A2I4EAH7_JUGRE; dof zinc finger protein DOF1.6-like isoform X1
STRING	POPTR_0004s04590.1	6e-97	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-33	OBF binding protein 4