PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00027263-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 314aa MW: 33993 Da PI: 6.882 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.6 | 1.8e-30 | 107 | 160 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl WALNUT_00027263-RA 107 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 160 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-20 | 104 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 104 | 163 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 106 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-24 | 108 | 160 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 110 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MREEDSNWFS RWEEELPSPE ELMPLSQTLI TPDLALAFDI RSPNNINNNS PTQPQAPPQS 60 QPQPSPSNPL PASATTPPHP NSAEFASDSA DLGSGPGGEE PARTLKRPRL VWTPQLHKRF 120 VDAVAHLGIK NAVPKTIMQL MSVDGLTREN VASHLQKYRL YLKRMQGLSA GSGGAGGAGG 180 LPATADPATD HLFASSPVPP HFLHPGRPNS DFLPFVPVAA LQHHHHQQQQ QQMAAVAAAA 240 AHPQLQQQYH RQVGHFGSPP SGQFEHPFLS RQSQPLHRMG TPVHNLVPGY VEDLESANGT 300 GGRKVLTLFP TGDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-31 | 107 | 163 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857668.1 | 0.0 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 4e-67 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A2I4HND4 | 0.0 | A0A2I4HND4_JUGRE; transcription factor PCL1-like | ||||
STRING | XP_010036386.1 | 1e-142 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 9e-85 | G2-like family protein |
Publications ? help Back to Top | |||
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