PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027247-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 890aa    MW: 97714.5 Da    PI: 7.8549
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027247-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-18342441198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ + 
  WALNUT_00027247-RA 342 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDAKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE- 430
                         89**************************555566778***************9989999999***9.********************765. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++l +++++
  WALNUT_00027247-RA 431 PEGKLIMGFRK 441
                         67767777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359043100IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.8E-30339449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19339441IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-22340441No hitNo description
PfamPF023621.8E-15342441IPR003340B3 DNA binding domain
SMARTSM010196.4E-21342443IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321342443IPR003340B3 DNA binding domain
PROSITE profilePS5105013.865569618IPR011124Zinc finger, CW-type
PfamPF074964.6E-11574615IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MGYSMSSASS SSQVCYNSDC KELKSEQPRK GWRLRTGEYA ELCDRCASVY EEGRFCETFH  60
LTATGWRCCE TCGKQVHCGC IVSIHTFTLL DRGGIECMTC ARKSVLWTSN PTWPASLCFN  120
SLLPERLKDL SVKNWSQLAG SGPVPWRQAP SLFNSIIPPP PELQSRIPFE VDISSGINKL  180
NSSERLSTSP LEKKKIDYFS ERLMNGSLKL GAREMLENGN AGIKCEENHS SGLSQQSSPL  240
KEEPSTPKFG VTLPHLSPNE TNGQTGICGT HLGTTPTSLP KQFHGNLQSG VDLSGEAQVR  300
NGKPRIDARG RNHLLSRYWP RFTNQELQQI TGDSNSVITP LFEKMLSASD AGRIGRLVLP  360
KKCAEAYFPP ISQPEGLPLK VQDAKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA  420
GDIVTFSRLE PEGKLIMGFR KASTAQSSDQ DNETSKTGNG VSTHGDAELA DPSSWYKVDK  480
SGYIAKEVLG GKSSISRKRK SSTLRPKSKR LRIENEDLIE LKLTWEEAQG LLRPPNCVPS  540
VVVIKGFEFE EYEDAPILGK PTIFATTDVG EKIQWVQCED CFKWRKLPAN ALLPSKWTCS  600
DSLDPERSIC SAAQELTAEQ LEDLLPQCNL AATKKIKAAK QDLDNVEALE GLDTLANLAI  660
LGEGEPLPAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQSCTCNVCL TVKRRFRTLM  720
LRREKKQSEK EGETTRKKLP QQQQTSPEKV QDDDSLPCSN KGNCSPKQIR GANDVSDDET  780
NRGKCSSPFK GKIDLNIQPE REEELSPGSD SGSMIKLLRD AAERFVMQQR LPSSGASGSV  840
STNQSKPSGD GAGGEKLSSL VALSSNHCDA DEDSPATLCI KESGSTPATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-643204452127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1495500SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815960.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2I4E9780.0A0A2I4E978_JUGRE; B3 domain-containing protein Os07g0563300-like
STRINGXP_006449227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-168high-level expression of sugar-inducible gene 2