PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00027217-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27234.6 Da PI: 9.3455 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.5e-13 | 52 | 99 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+ +ErrRR+riN +++Lr+llP+ +K +Ka+ L ++v+ +k+L WALNUT_00027217-RA 52 CKSHKDAERRRRQRINAHLSTLRSLLPNT-----TKTDKASLLAQVVHRVKEL 99 789*************************9.....8************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.37E-13 | 48 | 104 | No hit | No description |
PROSITE profile | PS50888 | 15.307 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 52 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-13 | 53 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-12 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00112 | 150 | 215 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLPLQSYYGS RSWLERKTEP GQQPSPTVNT MDGGDSMLSS ASMGERRSEE ACKSHKDAER 60 RRRQRINAHL STLRSLLPNT TKTDKASLLA QVVHRVKELR QQVADVPCRE GNGDACGSGS 120 DAVPDPWLLP GESDEATLSY CDGGKKVKAT LCCDDRPGLN VDLARAIKSV RARAVRAEMM 180 TVGGRTRSEV MVQWAGSGTG GDHEIGALKR ALKAVVENRA SNSGVGQGVS RNKRARINGS 240 LTDDNDFLLT GL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018858554.1 | 0.0 | PREDICTED: transcription factor bHLH106-like isoform X1 | ||||
Refseq | XP_018858555.1 | 0.0 | PREDICTED: transcription factor bHLH106-like isoform X1 | ||||
Refseq | XP_018858557.1 | 0.0 | PREDICTED: transcription factor bHLH106-like isoform X1 | ||||
TrEMBL | A0A2I4HQY4 | 0.0 | A0A2I4HQY4_JUGRE; transcription factor bHLH106-like isoform X1 | ||||
STRING | XP_010107684.1 | 2e-93 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11441 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 6e-34 | bHLH family protein |