PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027164-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 485aa    MW: 53737.5 Da    PI: 6.6313
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027164-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.8e-11227283155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +       rk  + g ++ +e Aa+a++ a++k++g
  WALNUT_00027164-RA 227 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEENAARAYDLAALKYWG 283
                         57*******************4444.2344336655.779999**************98 PP
2AP236.71.1e-11315360755
                 AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         r+++++grW A+I  +     +k  +lg+f t+ eAa+a++ a+ k++g
  WALNUT_00027164-RA 315 RRHHQQGRWQARIGRVAG---NKDLYLGTFATEAEAAEAYDIAAIKFRG 360
                         89**********988532...5**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-15227293IPR016177DNA-binding domain
PfamPF008473.9E-9227283IPR001471AP2/ERF domain
CDDcd000184.20E-19227293No hitNo description
Gene3DG3DSA:3.30.730.109.6E-13228292IPR001471AP2/ERF domain
PROSITE profilePS5103217.622228291IPR001471AP2/ERF domain
SMARTSM003804.9E-22228297IPR001471AP2/ERF domain
PRINTSPR003679.8E-7229240IPR001471AP2/ERF domain
PROSITE profilePS5103215.909301368IPR001471AP2/ERF domain
PfamPF008471.2E-6314360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-15316369IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-14316370IPR016177DNA-binding domain
SMARTSM003804.3E-23316374IPR001471AP2/ERF domain
PRINTSPR003679.8E-7350370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MASTTNWLSF SLSPLEMLRS SESQFLSYES SSTASPHYLI DSFYADGWAT PKPEVFYTEG  60
EESQAKEAHA QSLADSSIFT SFIDTQSQNQ PIPKLEDFLG DSSSMVRHSD SQTETQDSSL  120
TQIYDQGTAY FNEQQDIKAI DGLKAISNIS GSNVADSAPV AARAQKVTCA EFACHNPNES  180
SGNELDFTNC AKGALALGVA QRSEKTLVSV ESDRTKKIAD TFGPRTSIYR GVTRHRWTGR  240
YEAHLWDNSC RREGQARKGR QGGYDKEENA ARAYDLAALK YWGPTATTNF PVSNYTKELE  300
EMKHVTKQEL IASLRRHHQQ GRWQARIGRV AGNKDLYLGT FATEAEAAEA YDIAAIKFRG  360
ASAVTNFEMS RYDVEAISKS SLPVGGATKR LKLSQESEQK PFINPTQQAQ RSSTGSNSIN  420
FASIQPLPAI PCGIPFDAAT ALYHHHLFQH LQPRNTSTSN IATPTNIFPP PPPQAEFLLW  480
PHRYY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805961.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-163AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2I4DFN20.0A0A2I4DFN2_JUGRE; AP2-like ethylene-responsive transcription factor AIL6
STRINGVIT_00s1291g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-157AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]